Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g150122.1 Solanum lycopersicum HOM05D000058 ORTHO05D391758 2.0e-89 332.4 165 100.0
FAN15G1758 Fragaria x ananassa HOM05D000058 ORTHO05D000077 6.9e-10 68.2 30 93.3
FAN27G0438 Fragaria x ananassa HOM05D000058 ORTHO05D000077 6.9e-10 68.2 30 93.3
Sed0004674 Sechium edule HOM05D000058 ORTHO05D000077 6.9e-10 68.2 30 93.3
Hund26729 Selenicereus undatus HOM05D000058 ORTHO05D000077 6.9e-10 68.2 32 87.5
CAN.G744.18 Capsicum annuum HOM05D000058 ORTHO05D000077 9.0e-10 67.8 30 93.3
ClCG09G009840 Citrullus lanatus HOM05D000058 ORTHO05D000077 9.0e-10 67.8 30 93.3
Manes.18G087700 Manihot esculenta HOM05D000058 ORTHO05D000077 9.0e-10 67.8 32 87.5
Peaxi162Scf00263g00321 Petunia axillaris HOM05D000058 ORTHO05D000077 9.0e-10 67.8 30 93.3
Potri.002G071800 Populus trichocarpa HOM05D000058 ORTHO05D000077 9.0e-10 67.8 32 87.5
Prupe.8G019200 Prunus persica HOM05D000058 ORTHO05D000077 9.0e-10 67.8 30 90.0
Solyc04g064760.3 Solanum lycopersicum HOM05D000058 ORTHO05D000077 9.0e-10 67.8 30 93.3
Sopen04g026720 Solanum pennellii HOM05D000058 ORTHO05D000077 9.0e-10 67.8 30 93.3
PGSC0003DMG400024802 Solanum tuberosum HOM05D000058 ORTHO05D000077 9.0e-10 67.8 30 93.3
arahy.Tifrunner.gnm1.ann1.DD5I6P Arachis hypogaea HOM05D000058 ORTHO05D000077 1.2e-09 67.4 30 90.0
arahy.Tifrunner.gnm1.ann1.WM42FH Arachis hypogaea HOM05D000058 ORTHO05D000077 1.2e-09 67.4 30 90.0
Ah.05g167540 Amaranthus hybridus HOM05D000058 ORTHO05D000077 1.5e-09 67.0 30 90.0
EL10Ac1g01475 Beta vulgaris HOM05D000058 ORTHO05D000077 1.5e-09 67.0 30 90.0
MELO3C003808.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.5e-09 67.0 30 90.0
MELO3C023692.2 Cucumis melo HOM05D000058 ORTHO05D000077 1.5e-09 67.0 30 90.0
CsaV3_7G024890 Cucumis sativus L. HOM05D000058 ORTHO05D000077 1.5e-09 67.0 30 90.0
Sc20g0003370 Simmondsia chinensis HOM05D000058 ORTHO05D000077 1.5e-09 67.0 30 90.0
SGA_v2.0_scaffold48G17946 Striga asiatica HOM05D000058 ORTHO05D000077 1.5e-09 67.0 30 90.0
Atru.chr13.2267 Acer truncatum HOM05D000058 ORTHO05D000077 2.0e-09 66.6 33 81.8
MSTRG.25332 Avicennia marina HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
Cfa018362 Carpinus fangiana HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
Cc10_g12870 Coffea canephora HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
COL.COLO4_07951 Corchorus olitorius HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
Haze_17712 Corylus avellana HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
Duzib093G1722 Durio zibethinus HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
FvH4_2g14630 Fragaria vesca HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
FAN24G3377 Fragaria x ananassa HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
Nitab4.5_0000299g0090 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.0e-09 66.6 30 90.0
Phvul.001G073200 Phaseolus vulgaris HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
Sabra02G0056600 Salix brachista HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 90.0
Sed0011707 Sechium edule HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 86.7
unitig_32.g11279 Utricularia gibba HOM05D000058 ORTHO05D000077 2.0e-09 66.6 30 86.7
Aa31LG9G12270 Aethionema arabicum HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
BcaB04g17754 Brassica carinata HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
CANSAT25G0761 Cannabis sativa HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
Dinv41121 Davidia involucrata HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
Gohir.A05G241700 Gossypium hirsutum HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
Gohir.D05G243000 Gossypium hirsutum HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
Gorai.009G252300 Gossypium raimondii HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
QL02p025284 Quercus lobata HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
SalBow7G3899 Salvia bowleyana HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
Sp1g32890 Schrenkiella parvula HOM05D000058 ORTHO05D000077 2.6e-09 66.2 30 90.0
CARHR035510 Cardamine hirsuta HOM05D000058 ORTHO05D000077 3.4e-09 65.9 30 86.7
Nitab4.5_0004770g0110 Nicotiana tabacum HOM05D000058 ORTHO05D000077 3.4e-09 65.9 30 90.0
HPP92_018447 Vanilla planifolia HOM05D000058 ORTHO05D000077 3.4e-09 65.9 32 81.2
BcaC07g37446 Brassica carinata HOM05D000058 ORTHO05D000077 4.5e-09 65.5 75 48.0
C08p09210 Brassica napus HOM05D000058 ORTHO05D000077 4.5e-09 65.5 75 48.0
CSS0007565 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 4.5e-09 65.5 30 86.7
CSS0011399 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 4.5e-09 65.5 30 86.7
CARHR035490 Cardamine hirsuta HOM05D000058 ORTHO05D000077 4.5e-09 65.5 30 90.0
AUR62026782 Chenopodium quinoa HOM05D000058 ORTHO05D000077 4.5e-09 65.5 30 86.7
Migut.C01039 Erythranthe guttata HOM05D000058 ORTHO05D000077 4.5e-09 65.5 30 90.0
Lj7A364G81 Lonicera japonica HOM05D000058 ORTHO05D000077 4.5e-09 65.5 30 86.7
Manes.02G175300 Manihot esculenta HOM05D000058 ORTHO05D000077 4.5e-09 65.5 32 81.2
RcHm_v2.0_Chr6g0277101 Rosa chinensis HOM05D000058 ORTHO05D000077 4.5e-09 65.5 30 86.7
Thecc.08G144900 Theobroma cacao HOM05D000058 ORTHO05D000077 4.5e-09 65.5 30 90.0
Dinv19328 Davidia involucrata HOM05D000058 ORTHO05D000077 5.8e-09 65.1 30 86.7
Dinv25811 Davidia involucrata HOM05D000058 ORTHO05D000077 5.8e-09 65.1 30 86.7
Nn1g06201 Nelumbo nucifera HOM05D000058 ORTHO05D000077 5.8e-09 65.1 30 83.3
Nn5g28625 Nelumbo nucifera HOM05D000058 ORTHO05D000077 5.8e-09 65.1 30 83.3
BolC8t47769H Brassica oleracea HOM05D000058 ORTHO05D000077 7.6e-09 64.7 77 46.8
Cpa.g.sc49.63 Carica papaya HOM05D000058 ORTHO05D000077 7.6e-09 64.7 32 84.4
Eucgr.F02740 Eucalyptus grandis HOM05D000058 ORTHO05D000077 7.6e-09 64.7 30 86.7
Hma1.2p1_0107F.1_g051440 Hydrangea macrophylla HOM05D000058 ORTHO05D000077 7.6e-09 64.7 30 86.7
MD10G1015500 Malus domestica HOM05D000058 ORTHO05D000077 7.6e-09 64.7 30 86.7
Os11g0213600 Oryza sativa ssp. japonica HOM05D000058 ORTHO05D000077 7.6e-09 64.7 29 89.7
PSO170G0467 Papaver somniferum HOM05D000058 ORTHO05D000077 7.6e-09 64.7 30 86.7
Zm00001eb168520 Zea mays HOM05D000058 ORTHO05D000077 7.6e-09 64.7 29 89.7
A08p07470 Brassica napus HOM05D000058 ORTHO05D000077 1.0e-08 64.3 77 49.4
BraA08t32765Z Brassica rapa HOM05D000058 ORTHO05D000077 1.0e-08 64.3 77 49.4
AUR62013495 Chenopodium quinoa HOM05D000058 ORTHO05D000077 1.0e-08 64.3 30 83.3
DCAR_001106 Daucus carota HOM05D000058 ORTHO05D000077 1.0e-08 64.3 30 86.7
Duzib041G0638 Durio zibethinus HOM05D000058 ORTHO05D000077 1.0e-08 64.3 30 86.7
Thhalv10011445m.g Eutrema salsugineum HOM05D000058 ORTHO05D000077 1.0e-08 64.3 30 86.7
Glyma.14G122200 Glycine max HOM05D000058 ORTHO05D000077 1.0e-08 64.3 30 86.7
MD05G1015500 Malus domestica HOM05D000058 ORTHO05D000077 1.0e-08 64.3 69 47.8
Aa31LG6G9640 Aethionema arabicum HOM05D000058 ORTHO05D000077 1.3e-08 63.9 77 44.2
AT1G43780 Arabidopsis thaliana HOM05D000058 ORTHO05D000077 1.3e-08 63.9 30 86.7
ECA246G1055 Erigeron canadensis HOM05D000058 ORTHO05D000077 1.3e-08 63.9 30 83.3
HanXRQChr05g0161101 Helianthus annuus HOM05D000058 ORTHO05D000077 1.3e-08 63.9 30 83.3
Lsat_1_v5_gn_6_96620 Lactuca sativa HOM05D000058 ORTHO05D000077 1.3e-08 63.9 30 83.3
Solyc10g054090.2 Solanum lycopersicum HOM05D000058 ORTHO05D390396 1.3e-08 63.9 33 81.8
THA.LOC104798870 Tarenaya hassleriana HOM05D000058 ORTHO05D000077 1.3e-08 63.9 76 47.4
THA.LOC104806850 Tarenaya hassleriana HOM05D000058 ORTHO05D000077 1.3e-08 63.9 30 86.7
AL1G51870 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 1.7e-08 63.5 30 83.3
CAN.G523.100 Capsicum annuum HOM05D000058 ORTHO05D000077 1.7e-08 63.5 29 89.7
CiPaw.15G021300 Carya illinoinensis HOM05D000058 ORTHO05D000077 1.7e-08 63.5 30 86.7
CDE08G0254 Ceratophyllum demersum HOM05D000058 ORTHO05D000077 1.7e-08 63.5 30 83.3
DCAR_031497 Daucus carota HOM05D000058 ORTHO05D000077 1.7e-08 63.5 30 83.3
MBI03_g11311_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D000077 1.7e-08 63.5 30 80.0
Nitab4.5_0001619g0120 Nicotiana tabacum HOM05D000058 ORTHO05D000077 1.7e-08 63.5 29 89.7
Oeu000782.1 Olea europaea HOM05D000058 ORTHO05D000077 2.2e-08 63.2 30 83.3
QL07p001756 Quercus lobata HOM05D000058 ORTHO05D000077 2.2e-08 63.2 30 86.7
Solyc01g104850.3 Solanum lycopersicum HOM05D000058 ORTHO05D000077 2.2e-08 63.2 29 89.7
Sopen01g047370 Solanum pennellii HOM05D000058 ORTHO05D000077 2.2e-08 63.2 29 89.7
TAR625G0693 Trochodendron aralioides HOM05D000058 ORTHO05D000077 2.2e-08 63.2 30 83.3
Nitab4.5_0002893g0040 Nicotiana tabacum HOM05D000058 ORTHO05D000077 2.9e-08 62.8 29 86.2
Peaxi162Scf00001g00529 Petunia axillaris HOM05D000058 ORTHO05D000077 2.9e-08 62.8 29 86.2
Phvul.009G134900 Phaseolus vulgaris HOM05D000058 ORTHO05D000077 2.9e-08 62.8 30 83.3
GSVIVG01029749001 Vitis vinifera HOM05D000058 ORTHO05D000077 2.9e-08 62.8 30 83.3
CSS0004022 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 3.8e-08 62.4 30 83.3
Carub.0001s3476 Capsella rubella HOM05D000058 ORTHO05D000077 3.8e-08 62.4 30 83.3
Glyma.04G240600 Glycine max HOM05D000058 ORTHO05D000077 3.8e-08 62.4 30 83.3
Glyma.06G122800 Glycine max HOM05D000058 ORTHO05D000077 3.8e-08 62.4 30 83.3
PGSC0003DMG400029765 Solanum tuberosum HOM05D000058 ORTHO05D000077 3.8e-08 62.4 29 86.2
Ciclev10000998m.g Citrus clementina HOM05D000058 ORTHO05D000077 4.9e-08 62.0 30 83.3
Lalb_Chr23g0271361 Lupinus albus HOM05D000058 ORTHO05D000077 4.9e-08 62.0 30 80.0
Oeu007010.1 Olea europaea HOM05D000058 ORTHO05D000077 4.9e-08 62.0 30 80.0
Zm00001eb090850 Zea mays HOM05D000058 ORTHO05D000077 4.9e-08 62.0 74 48.6
AL8G19380 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 6.5e-08 61.6 29 86.2
AT5G42240 Arabidopsis thaliana HOM05D000058 ORTHO05D000077 6.5e-08 61.6 29 86.2
Carub.0008s0697 Capsella rubella HOM05D000058 ORTHO05D000077 6.5e-08 61.6 29 86.2
GSVIVG01010033001 Vitis vinifera HOM05D000058 ORTHO05D000077 8.4e-08 61.2 30 83.3
Lj1g0017077 Lotus japonicus HOM05D000058 ORTHO05D000077 1.1e-07 60.8 30 80.0
Lj1g0026445 Lotus japonicus HOM05D000058 ORTHO05D000077 1.1e-07 60.8 30 80.0
VMungo1309G1965 Vigna mungo HOM05D000058 ORTHO05D000077 1.1e-07 60.8 30 80.0
Medtr5g072570 Medicago truncatula HOM05D000058 ORTHO05D000077 1.4e-07 60.5 30 80.0
Psat6g016000 Pisum sativum HOM05D000058 ORTHO05D000077 1.4e-07 60.5 30 80.0
PGR042G0180 Punica granatum HOM05D000058 ORTHO05D000077 1.4e-07 60.5 35 74.3
TPR.G29705 Trifolium pratense HOM05D000058 ORTHO05D000077 1.4e-07 60.5 30 80.0
CARHR184500 Cardamine hirsuta HOM05D000058 ORTHO05D000077 1.9e-07 60.1 29 82.8
HanXRQChr08g0232561 Helianthus annuus HOM05D000058 ORTHO05D000077 1.9e-07 60.1 30 73.3
Psat5g081040 Pisum sativum HOM05D000058 ORTHO05D000077 1.9e-07 60.1 29 82.8
TPR.G18766 Trifolium pratense HOM05D000058 ORTHO05D000077 1.9e-07 60.1 30 80.0
AL8G19440 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 2.5e-07 59.7 30 76.7
Ca_05639_v3 Cicer arietinum L. HOM05D000058 ORTHO05D000077 2.5e-07 59.7 30 80.0
AL3G45000 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 3.2e-07 59.3 29 82.8
AUR62013493 Chenopodium quinoa HOM05D000058 ORTHO05D000077 3.2e-07 59.3 30 80.0
AUR62026784 Chenopodium quinoa HOM05D000058 ORTHO05D000077 3.2e-07 59.3 30 80.0
AT5G42230 Arabidopsis thaliana HOM05D000058 ORTHO05D000077 5.5e-07 58.5 30 73.3
EL10Ac1g01473 Beta vulgaris HOM05D000058 ORTHO05D000077 5.5e-07 58.5 37 62.2
TPR.G18757 Trifolium pratense HOM05D000058 ORTHO05D000077 7.1e-07 58.2 30 76.7
TWI60G0220 Tripterygium wilfordii HOM05D000058 ORTHO05D000077 7.1e-07 58.2 91 40.7
Carub.0008s0703 Capsella rubella HOM05D000058 ORTHO05D000077 1.2e-06 57.4 28 78.6
Ca_24296_v3 Cicer arietinum L. HOM05D000058 ORTHO05D000077 1.2e-06 57.4 29 79.3
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.2e-06 57.4 29 79.3
CsaV3_6G030970 Cucumis sativus L. HOM05D000058 ORTHO05D000077 1.2e-06 57.4 29 79.3
Medtr3g090150 Medicago truncatula HOM05D000058 ORTHO05D000077 1.6e-06 57.0 30 73.3
Ah.01g006380 Amaranthus hybridus HOM05D000058 ORTHO05D000077 2.1e-06 56.6 36 63.9
AL8G19460 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 2.1e-06 56.6 30 73.3
Medtr3g090130 Medicago truncatula HOM05D000058 ORTHO05D000077 2.1e-06 56.6 29 79.3
AT2G12480 Arabidopsis thaliana HOM05D000058 ORTHO05D000077 2.7e-06 56.2 75 42.7
ATR1136G045 Amborella trichopoda HOM05D000058 ORTHO05D000077 3.5e-06 55.8 30 73.3
Carub.0003s2780 Capsella rubella HOM05D000058 ORTHO05D000077 7.9e-06 54.7 75 41.3


User provided reference genes

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