Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g054290.2 Solanum lycopersicum HOM05D028504 ORTHO05D022959 9.7e-110 400.2 208 100.0
Sopen05g032770 Solanum pennellii HOM05D001406 ORTHO05D002467 8.6e-58 227.6 146 87.7
Solyc05g054280.1 Solanum lycopersicum HOM05D028504 ORTHO05D022959 3.5e-43 179.1 210 54.3
PGSC0003DMG400042060 Solanum tuberosum HOM05D028504 ORTHO05D022959 7.8e-43 177.9 180 58.3
PGSC0003DMG400038819 Solanum tuberosum HOM05D001999 ORTHO05D022959 6.0e-35 151.8 213 49.3
PGSC0003DMG400043366 Solanum tuberosum HOM05D028504 ORTHO05D022959 8.7e-18 94.7 189 36.0
Nitab4.5_0001233g0060 Nicotiana tabacum HOM05D001999 ORTHO05D001994 4.3e-17 92.4 76 56.6
ECA236G0210 Erigeron canadensis HOM05D001999 ORTHO05D001994 4.2e-12 75.9 76 50.0
BcaC02g12548 Brassica carinata HOM05D001999 ORTHO05D001994 5.4e-12 75.5 55 58.2
C04p00170 Brassica napus HOM05D001999 ORTHO05D001994 5.4e-12 75.5 55 58.2
BcaB02g08752 Brassica carinata HOM05D001999 ORTHO05D001994 9.3e-12 74.7 55 56.4
AT2G47700 Arabidopsis thaliana HOM05D001999 ORTHO05D001994 1.6e-11 73.9 67 52.2
BolC4t21664H Brassica oleracea HOM05D001999 ORTHO05D001994 1.6e-11 73.9 55 56.4
Nitab4.5_0010216g0020 Nicotiana tabacum HOM05D001999 ORTHO05D001994 1.6e-11 73.9 62 51.6
PGSC0003DMG400024717 Solanum tuberosum HOM05D001999 ORTHO05D001994 1.6e-11 73.9 62 51.6
Aa31LG1G29020 Aethionema arabicum HOM05D001999 ORTHO05D001994 2.1e-11 73.6 55 58.2
AL4G47270 Arabidopsis lyrata HOM05D001999 ORTHO05D001994 2.1e-11 73.6 55 58.2
Nitab4.5_0003844g0010 Nicotiana tabacum HOM05D001999 ORTHO05D001994 2.1e-11 73.6 62 51.6
Lj1g0010414 Lotus japonicus HOM05D001999 ORTHO05D001994 2.7e-11 73.2 60 51.7
Peaxi162Scf00037g01221 Petunia axillaris HOM05D001999 ORTHO05D001994 2.7e-11 73.2 60 51.7
A05p00260 Brassica napus HOM05D001999 ORTHO05D001994 3.5e-11 72.8 55 56.4
BraA05t19023Z Brassica rapa HOM05D001999 ORTHO05D001994 3.5e-11 72.8 55 56.4
CDE02G4508 Ceratophyllum demersum HOM05D001999 ORTHO05D001994 3.5e-11 72.8 64 46.9
Thhalv10001505m.g Eutrema salsugineum HOM05D001999 ORTHO05D001994 3.5e-11 72.8 55 56.4
HanXRQChr04g0118031 Helianthus annuus HOM05D001999 ORTHO05D001994 3.5e-11 72.8 60 53.3
SMO165G0108 Selaginella moellendorffii HOM05D001999 ORTHO05D001994 4.6e-11 72.4 64 51.6
Solyc01g099790.3 Solanum lycopersicum HOM05D001999 ORTHO05D001994 4.6e-11 72.4 62 50.0
Sopen01g043310 Solanum pennellii HOM05D001999 ORTHO05D001994 4.6e-11 72.4 62 50.0
vmacro15001 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 4.6e-11 72.4 60 53.3
Hma1.2p1_0209F.1_g088440 Hydrangea macrophylla HOM05D001999 ORTHO05D001994 6.0e-11 72.0 68 50.0
Sp4g29640 Schrenkiella parvula HOM05D001999 ORTHO05D001994 6.0e-11 72.0 55 56.4
Actinidia21053 Actinidia chinensis HOM05D001999 ORTHO05D001994 7.9e-11 71.6 69 47.8
Ca_10133_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 7.9e-11 71.6 55 50.9
Psat0s1500g0040 Pisum sativum HOM05D001999 ORTHO05D001994 7.9e-11 71.6 55 50.9
Rhsim13G0010900 Rhododendron simsii HOM05D001999 ORTHO05D001994 7.9e-11 71.6 65 49.2
arahy.Tifrunner.gnm1.ann1.5G7CV2 Arachis hypogaea HOM05D001999 ORTHO05D001994 1.0e-10 71.2 55 50.9
arahy.Tifrunner.gnm1.ann1.XS7LB4 Arachis hypogaea HOM05D001999 ORTHO05D001994 1.0e-10 71.2 55 50.9
Medtr1g083390 Medicago truncatula HOM05D001999 ORTHO05D001994 1.0e-10 71.2 55 50.9
Peaxi162Scf00071g00544 Petunia axillaris HOM05D001999 ORTHO05D001994 1.0e-10 71.2 60 50.0
THA.LOC104805890 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 1.0e-10 71.2 55 52.7
TPR.G17700 Trifolium pratense HOM05D001999 ORTHO05D001994 1.0e-10 71.2 55 50.9
Carub.0004s3042 Capsella rubella HOM05D001999 ORTHO05D001994 1.8e-10 70.5 55 52.7
CSS0046081 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 2.3e-10 70.1 59 49.2
Lalb_Chr06g0167721 Lupinus albus HOM05D001999 ORTHO05D001994 2.3e-10 70.1 55 50.9
vmacro02456 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 2.3e-10 70.1 60 51.7
ATR0582G131 Amborella trichopoda HOM05D001999 ORTHO05D001994 3.0e-10 69.7 59 54.2
CiPaw.07G107800 Carya illinoinensis HOM05D001999 ORTHO05D001994 3.0e-10 69.7 55 54.5
Gohir.D08G138700 Gossypium hirsutum HOM05D001999 ORTHO05D001994 3.0e-10 69.7 68 47.1
Gorai.004G142300 Gossypium raimondii HOM05D001999 ORTHO05D001994 3.0e-10 69.7 68 47.1
MBI19_g13195_MAGBIO Magnolia biondii HOM05D001999 ORTHO05D001994 3.0e-10 69.7 60 50.0
Manes.03G196300 Manihot esculenta HOM05D001999 ORTHO05D001994 3.0e-10 69.7 71 46.5
PGSC0003DMG400029067 Solanum tuberosum HOM05D001999 ORTHO05D001994 3.0e-10 69.7 55 52.7
Actinidia24828 Actinidia chinensis HOM05D001999 ORTHO05D001994 3.9e-10 69.3 64 46.9
DCAR_002825 Daucus carota HOM05D001999 ORTHO05D001994 3.9e-10 69.3 63 47.6
Lsat_1_v5_gn_8_53500 Lactuca sativa HOM05D001999 ORTHO05D001994 3.9e-10 69.3 60 50.0
Manes.08G117000 Manihot esculenta HOM05D001999 ORTHO05D001994 3.9e-10 69.3 55 50.9
SEGI_15866 Sequoiadendron giganteum HOM05D001999 ORTHO05D001994 5.1e-10 68.9 60 53.3
THA.LOC104817500 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 5.1e-10 68.9 55 52.7
Glyma.10G151500 Glycine max HOM05D001999 ORTHO05D001994 6.7e-10 68.6 55 50.9
Glyma.20G236700 Glycine max HOM05D001999 ORTHO05D001994 6.7e-10 68.6 55 50.9
HanXRQChr11g0339901 Helianthus annuus HOM05D001999 ORTHO05D001994 6.7e-10 68.6 55 50.9
Mapoly0065s0060 Marchantia polymorpha HOM05D001999 ORTHO05D001994 6.7e-10 68.6 55 58.2
Gohir.A08G117700 Gossypium hirsutum HOM05D001999 ORTHO05D001994 8.7e-10 68.2 55 52.7
Oeu043342.1 Olea europaea HOM05D001999 ORTHO05D001994 8.7e-10 68.2 55 50.9
TAR622G0837 Trochodendron aralioides HOM05D001999 ORTHO05D001994 8.7e-10 68.2 55 54.5
HPP92_028335 Vanilla planifolia HOM05D001999 ORTHO05D001994 8.7e-10 68.2 55 54.5
ATR0796G022 Amborella trichopoda HOM05D001999 ORTHO05D001994 1.5e-09 67.4 55 52.7
Prupe.1G134800 Prunus persica HOM05D001999 ORTHO05D001994 1.5e-09 67.4 69 42.0
Sc06g0004090 Simmondsia chinensis HOM05D001999 ORTHO05D001994 1.5e-09 67.4 58 50.0
CDE06G2813 Ceratophyllum demersum HOM05D001999 ORTHO05D001994 1.9e-09 67.0 60 53.3
Sed0011984 Sechium edule HOM05D001999 ORTHO05D001994 2.5e-09 66.6 56 51.8
Mapoly0004s0157 Marchantia polymorpha HOM05D001999 ORTHO05D001994 3.3e-09 66.2 55 50.9
MSTRG.16390 Avicennia marina HOM05D001999 ORTHO05D001994 4.3e-09 65.9 55 50.9
CDE02G3296 Ceratophyllum demersum HOM05D001999 ORTHO05D001994 5.6e-09 65.5 55 54.5
MBI07_g11060_MAGBIO Magnolia biondii HOM05D001999 ORTHO05D001994 5.6e-09 65.5 52 57.7
MapolyY_B0002 Marchantia polymorpha HOM05D001999 ORTHO05D001994 5.6e-09 65.5 51 52.9
unitig_0.g2317 Utricularia gibba HOM05D001999 ORTHO05D001994 5.6e-09 65.5 55 50.9
Aqoxy2G02961 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 1.6e-08 63.9 59 45.8
Nitab4.5_0001904g0010 Nicotiana tabacum HOM05D001999 ORTHO05D022959 1.6e-08 63.9 39 66.7
Cfa015396 Carpinus fangiana HOM05D001999 ORTHO05D001994 2.1e-08 63.5 59 44.1
Aqoxy5G00748 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 2.8e-08 63.2 55 47.3
MapolyY_A0053 Marchantia polymorpha HOM05D001999 ORTHO05D001994 3.7e-08 62.8 51 56.9
MD13G1167400 Malus domestica HOM05D001999 ORTHO05D001994 6.2e-08 62.0 72 41.7
Os08g0539300 Oryza sativa ssp. japonica HOM05D001999 ORTHO05D001994 8.1e-08 61.6 55 49.1
Mapoly0067s0019 Marchantia polymorpha HOM05D001999 ORTHO05D001994 4.0e-07 59.3 52 48.1
Mapoly0149s0027 Marchantia polymorpha HOM05D001999 ORTHO05D001994 5.3e-07 58.9 53 49.1
Thecc.04G286000 Theobroma cacao HOM05D001999 ORTHO05D001994 5.3e-07 58.9 57 42.1
Zm00001eb198260 Zea mays HOM05D001999 ORTHO05D001994 5.3e-07 58.9 56 46.4
Zm00001eb037170 Zea mays HOM05D001999 ORTHO05D001994 6.9e-07 58.5 59 45.8
Ah.06g189850 Amaranthus hybridus HOM05D000145 ORTHO05D001994 1.2e-06 57.8 46 52.2
PGSC0003DMG400014085 Solanum tuberosum HOM05D001999 ORTHO05D001994 1.5e-06 57.4 55 43.6
COL.COLO4_13852 Corchorus olitorius HOM05D001999 ORTHO05D044710 2.6e-06 56.6 56 41.1
COL.COLO4_23755 Corchorus olitorius HOM05D001999 ORTHO05D044710 4.5e-06 55.8 56 41.1
AL7G42810 Arabidopsis lyrata HOM05D001999 ORTHO05D001994 7.6e-06 55.1 55 47.3


User provided reference genes

Program Settings