Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 0.0e+00 1114.4 550 100.0
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.9e-306 1055.0 524 99.4
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 3.2e-301 1037.7 524 97.9
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.8e-281 971.5 520 92.7
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.2e-279 966.1 531 91.0
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 3.9e-275 951.0 525 90.5
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 4.4e-271 937.6 531 89.1
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.6e-244 849.4 516 80.8
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 2.3e-243 845.5 515 81.7
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 4.3e-242 841.3 512 80.9
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.3e-241 839.7 530 79.6
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 4.5e-239 831.2 537 78.2
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 4.5e-239 831.2 523 79.7
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.9e-238 828.6 514 81.5
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.9e-238 828.6 521 78.9
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 3.8e-238 828.2 531 77.8
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 8.5e-238 827.0 532 77.8
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 4.2e-237 824.7 523 78.8
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 3.6e-236 821.6 503 79.9
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 8.7e-235 817.0 501 80.2
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.4e-232 808.9 508 78.0
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 9.1e-232 807.0 513 79.5
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.5e-231 806.2 544 74.4
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 5.9e-231 804.3 511 78.9
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.2e-230 802.4 512 79.1
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 5.0e-230 801.2 523 77.8
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 5.0e-230 801.2 514 79.0
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.9e-229 799.3 513 78.2
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.9e-229 799.3 516 77.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.9e-229 799.3 514 78.2
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.2e-229 798.5 513 77.8
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.2e-228 796.6 523 77.4
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.7e-228 795.4 513 78.0
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 6.1e-228 794.3 513 77.8
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.9e-228 793.9 513 77.8
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.0e-227 793.5 523 77.2
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-227 793.1 513 77.8
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 6.7e-227 790.8 519 76.1
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.0e-226 789.3 523 75.5
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 4.4e-226 788.1 520 77.5
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 2.8e-225 785.4 513 77.6
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 3.7e-225 785.0 511 77.1
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 8.2e-225 783.9 519 77.6
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.8e-224 782.7 513 78.0
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.1e-224 781.6 512 77.7
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 7.7e-223 777.3 514 76.1
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 2.2e-222 775.8 508 76.8
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 3.8e-222 775.0 593 69.3
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 8.5e-222 773.9 516 76.7
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 9.4e-221 770.4 506 75.7
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 2.1e-220 769.2 509 76.2
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 2.1e-220 769.2 511 76.9
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.4e-219 766.5 490 78.4
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 8.8e-219 763.8 549 73.0
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.5e-218 763.1 521 76.2
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.6e-218 762.3 516 74.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 3.3e-218 761.9 523 73.2
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.2e-217 759.2 508 75.2
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.8e-216 756.1 512 74.6
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.2e-215 753.4 490 76.9
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 5.9e-215 751.1 511 74.4
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 7.7e-215 750.7 509 74.1
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.2e-214 749.2 523 72.8
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 6.5e-214 747.7 509 74.3
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.5e-213 746.5 528 73.7
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 9.4e-213 743.8 515 73.4
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.2e-212 743.4 507 74.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.6e-212 743.0 508 74.0
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 6.1e-212 741.1 515 74.0
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.1e-212 741.1 513 73.3
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.0e-211 738.8 511 72.6
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.7e-210 734.6 509 73.3
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.3e-209 733.4 508 73.6
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 4.1e-208 728.4 469 78.9
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 9.1e-208 727.2 515 72.6
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.6e-207 726.5 479 75.6
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 1.3e-206 723.4 465 80.0
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 2.2e-206 722.6 552 68.3
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.2e-204 716.8 512 71.7
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.2e-204 716.8 500 71.2
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.8e-203 713.0 514 71.4
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.8e-203 713.0 514 71.4
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.3e-203 712.6 519 70.3
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.2e-201 706.1 508 70.9
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 4.8e-201 704.9 534 70.4
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.8e-201 704.9 535 68.4
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 7.2e-197 691.0 438 79.2
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.8e-195 686.4 513 69.0
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.0e-195 685.3 517 68.3
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.4e-194 682.2 511 68.9
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.5e-191 672.2 469 73.3
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 4.5e-191 671.8 513 69.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 5.9e-191 671.4 469 73.3
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.7e-188 661.8 524 65.6
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.4e-185 651.4 423 77.8
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.9e-182 642.1 515 62.3
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 4.3e-181 638.6 523 64.6
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.3e-179 632.9 471 70.5
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.4e-178 629.0 539 62.2
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.2e-175 620.5 441 72.1
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.0e-174 617.5 365 85.2
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.3e-174 616.3 485 64.5
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 5.0e-174 615.1 373 83.9
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.2e-172 610.5 494 63.6
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.8e-172 609.4 555 58.6
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.4e-171 607.1 497 63.6
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 6.2e-164 581.6 365 79.2
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 5.2e-163 578.6 339 83.8
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 3.2e-160 569.3 394 73.6
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.6e-159 567.0 387 76.5
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 6.0e-159 565.1 491 60.9
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 9.6e-157 557.8 460 64.1
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.3e-153 547.4 498 57.6
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.9e-152 543.5 493 57.6
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 3.3e-149 532.7 537 53.6
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 7.3e-149 531.6 362 75.1
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.2e-145 520.0 491 55.6
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.4e-139 500.7 426 64.1
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 2.0e-138 496.9 496 53.0
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.4e-136 490.0 289 82.4
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 8.2e-132 474.9 515 49.5
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 5.8e-130 468.8 367 67.8
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 4.8e-124 449.1 346 70.5
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 6.9e-115 418.7 431 50.3
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-110 404.4 479 50.3
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.1e-104 384.8 372 59.7
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.5e-101 374.4 331 62.8
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.3e-99 365.9 292 66.8
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.8e-84 317.0 326 55.8
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.7e-84 316.6 246 66.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.8e-78 297.7 230 65.7
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.3e-76 289.3 216 64.8
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.7e-74 283.9 160 81.9
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 4.7e-71 273.1 400 39.0
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.9e-65 253.4 144 83.3
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 2.1e-63 247.7 306 43.1
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 4.4e-61 240.0 141 80.1
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.3e-60 238.4 144 79.9
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 3.3e-56 223.8 215 59.5
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.2e-55 221.9 330 40.9
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 7.1e-43 179.5 165 57.6
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 9.2e-43 179.1 202 52.5
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.8e-39 167.5 100 77.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.4e-38 164.5 104 73.1
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.4e-29 134.0 350 29.4
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 7.9e-26 122.9 68 80.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.8e-25 121.7 125 60.0
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.3e-23 115.5 449 26.5
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.8e-17 95.1 88 55.7
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.9e-16 91.7 65 69.2
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 6.9e-14 83.2 60 68.3
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.2e-10 72.4 45 73.3
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.3e-09 68.2 54 57.4
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 3.0e-09 67.8 38 78.9
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 2.8e-07 61.2 64 51.6
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.8e-07 61.2 46 58.7
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.1e-06 59.3 51 64.7


User provided reference genes

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