Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-57 226.5 110 100.0
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 9.8e-44 180.3 126 75.4
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 4.1e-34 148.3 106 74.5
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.2e-29 131.3 100 71.0
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 2.1e-25 119.4 93 69.9
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 3.0e-24 115.5 86 70.9
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 2.5e-23 112.5 93 64.5
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 3.3e-23 112.1 81 71.6
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 5.6e-23 111.3 95 63.2
Solyc12g035825.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 9.5e-23 110.5 109 57.8
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 1.2e-22 110.2 95 63.2
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 1.2e-22 110.2 95 63.2
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 1.2e-22 110.2 95 63.2
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.2e-22 110.2 93 63.4
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-22 109.4 95 62.1
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-22 109.4 95 62.1
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-22 109.4 95 62.1
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-22 109.4 95 62.1
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-22 109.4 95 62.1
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.1e-22 109.4 95 62.1
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 2.1e-22 109.4 95 63.2
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 2.1e-22 109.4 95 62.1
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 2.1e-22 109.4 95 62.1
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.8e-22 109.0 95 62.1
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.8e-22 109.0 95 62.1
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 2.8e-22 109.0 94 62.8
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 2.8e-22 109.0 94 62.8
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 3.6e-22 108.6 91 63.7
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 6.2e-22 107.8 94 62.8
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 8.1e-22 107.5 91 62.6
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 1.1e-21 107.1 95 64.2
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.1e-21 107.1 117 52.1
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 1.4e-21 106.7 95 61.1
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.4e-21 105.9 57 87.7
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 3.4e-20 102.1 86 64.0
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 4.4e-20 101.7 93 58.1
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 7.6e-20 100.9 88 61.4
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 7.6e-20 100.9 88 61.4
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 2.2e-19 99.4 57 80.7
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 2.2e-19 99.4 86 62.8
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 2.9e-19 99.0 86 61.6
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 2.9e-19 99.0 86 61.6
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 2.9e-19 99.0 86 61.6
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 3.8e-19 98.6 57 80.7
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 3.8e-19 98.6 57 80.7
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 4.9e-19 98.2 57 80.7
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 4.9e-19 98.2 57 80.7
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 6.4e-19 97.8 57 80.7
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 6.4e-19 97.8 88 59.1
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 6.4e-19 97.8 57 80.7
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 8.4e-19 97.4 57 82.5
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.4e-18 96.7 86 55.8
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 2.4e-18 95.9 57 80.7
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 78.9
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 78.9
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 78.9
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 78.9
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 78.9
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 78.9
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 78.9
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 78.9
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 78.9
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 3.2e-18 95.5 57 77.2
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 4.2e-18 95.1 57 80.7
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 5.4e-18 94.7 57 80.7
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 5.4e-18 94.7 57 80.7
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.4e-18 94.7 57 80.7
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 5.4e-18 94.7 57 77.2
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 5.4e-18 94.7 57 78.9
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 5.4e-18 94.7 57 78.9
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 7.1e-18 94.4 57 77.2
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 7.1e-18 94.4 57 77.2
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 9.2e-18 94.0 57 77.2
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 1.6e-17 93.2 91 57.1
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 1.6e-17 93.2 57 78.9
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 2.7e-17 92.4 91 56.0
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 6.0e-17 91.3 57 75.4
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 6.0e-17 91.3 57 75.4
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 7.8e-17 90.9 57 75.4
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 1.0e-16 90.5 74 66.2
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 1.0e-16 90.5 57 75.4
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 1.7e-16 89.7 79 62.0
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 2.5e-15 85.9 45 91.1
Solyc00g500102.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 4.3e-15 85.1 54 77.8
Solyc00g500119.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 4.3e-15 85.1 54 77.8
Solyc00g500276.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 4.3e-15 85.1 54 77.8
Solyc00g500360.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 4.3e-15 85.1 54 77.8
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 2.4e-13 79.3 57 63.2
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 9.0e-13 77.4 41 87.8
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 1.2e-12 77.0 57 63.2
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 2.6e-12 75.9 57 57.9
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 2.6e-12 75.9 95 51.6
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 3.4e-12 75.5 57 59.6
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 7.6e-12 74.3 42 78.6
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 1.7e-11 73.2 41 82.9
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 8.4e-11 70.9 41 82.9
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 8.4e-11 70.9 88 47.7
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-10 70.5 54 66.7
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 2.4e-10 69.3 41 78.0
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 7.1e-10 67.8 39 79.5
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 7.8e-09 64.3 57 56.1
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 1.0e-08 63.9 67 53.7
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 1.0e-08 63.9 51 62.7
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.3e-08 63.5 38 73.7
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 9.6e-07 57.4 27 92.6


User provided reference genes

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