Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g045770.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.4e-39 163.3 77 100.0
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.1e-26 122.9 71 78.9
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.2e-26 120.9 66 83.3
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.2e-26 120.9 66 83.3
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 9.3e-26 119.8 73 76.7
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.1e-25 118.6 66 81.8
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 4.6e-25 117.5 73 76.7
Nn1g10074 Nelumbo nucifera HOM05D001987 ORTHO05D006514 1.3e-24 115.9 73 75.3
Sopen05g027070 Solanum pennellii HOM05D001987 ORTHO05D006514 2.3e-24 115.2 69 76.8
ECA240G1514 Erigeron canadensis HOM05D001987 ORTHO05D006514 3.0e-24 114.8 74 73.0
HanXRQChr14g0433081 Helianthus annuus HOM05D001987 ORTHO05D006514 3.0e-24 114.8 74 73.0
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 3.0e-24 114.8 74 73.0
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 3.0e-24 114.8 74 73.0
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 3.0e-24 114.8 74 73.0
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 3.9e-24 114.4 73 74.0
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 5.1e-24 114.0 73 74.0
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 6.7e-24 113.6 73 74.0
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 8.7e-24 113.2 73 74.0
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.9e-23 112.1 66 81.8
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 2.1e-22 108.6 73 71.2
RhsimMtG0002600 Rhododendron simsii HOM05D001987 ORTHO05D006514 2.8e-22 108.2 73 71.2
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 6.3e-22 107.1 73 71.2
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 1.8e-21 105.5 73 69.9
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 5.3e-21 104.0 77 68.8
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 5.3e-21 104.0 77 68.8
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 1.2e-20 102.8 62 75.8
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 1.2e-20 102.8 62 75.8
Solyc09g015850.4 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.5e-20 102.4 64 76.6
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 2.0e-20 102.1 73 64.4
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 5.9e-20 100.5 74 67.6
Sp3g25720 Schrenkiella parvula HOM05D001987 ORTHO05D006514 1.7e-19 99.0 74 66.2
ATMG00090 Arabidopsis thaliana HOM05D001987 ORTHO05D006514 1.4e-18 95.9 74 64.9
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 1.9e-18 95.5 76 63.2
CARHR282630 Cardamine hirsuta HOM05D001987 ORTHO05D006514 1.2e-17 92.8 74 63.5
SGA_v2.0_scaffold339G49282 Striga asiatica HOM05D001987 ORTHO05D006514 2.1e-17 92.0 62 69.4
Ah.10g027970 Amaranthus hybridus HOM05D001987 ORTHO05D006514 2.7e-17 91.7 62 69.4
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-16 89.4 76 63.2
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-16 89.4 76 63.2
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-16 89.4 76 63.2
Ah.02g118900 Amaranthus hybridus HOM05D001987 ORTHO05D006514 1.8e-16 89.0 62 66.1
arahy.Tifrunner.gnm1.ann1.7A4IEF Arachis hypogaea HOM05D001987 ORTHO05D006514 3.9e-16 87.8 76 61.8
A04p09400 Brassica napus HOM05D001987 ORTHO05D006514 3.9e-16 87.8 74 62.2
BolSC28t60315H Brassica oleracea HOM05D001987 ORTHO05D006514 3.9e-16 87.8 74 62.2
BolSC28t60371H Brassica oleracea HOM05D001987 ORTHO05D006514 3.9e-16 87.8 74 62.2
BraSC159t45730Z Brassica rapa HOM05D001987 ORTHO05D006514 3.9e-16 87.8 74 62.2
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 3.9e-16 87.8 75 61.3
BraSC48t46240Z Brassica rapa HOM05D001987 ORTHO05D006514 2.6e-12 75.1 70 57.1
MELO3C028575.2 Cucumis melo HOM05D001987 ORTHO05D006514 3.4e-12 74.7 98 45.9
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 6.5e-11 70.5 101 44.6
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 7.2e-10 67.0 44 72.7
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.3e-08 62.0 77 45.5
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.3e-08 62.0 77 45.5
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.3e-08 62.0 77 45.5
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.3e-08 62.0 77 45.5
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.3e-08 62.0 77 45.5
CAN.G1202.8 Capsicum annuum HOM05D001987 ORTHO05D006514 5.1e-08 60.8 36 80.6
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 8.8e-08 60.1 77 44.2
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 1.1e-07 59.7 42 64.3
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 1.1e-07 59.7 40 70.0
MBI16_g09478_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 3.3e-07 58.2 40 67.5
Solyc05g045822.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.3e-07 58.2 37 67.6
CAN.G1542.10 Capsicum annuum HOM05D001987 ORTHO05D006514 4.8e-06 54.3 36 66.7
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 6.3e-06 53.9 30 83.3
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 6.3e-06 53.9 73 43.8


User provided reference genes

Program Settings