Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 3585.4 1865 100.0
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 3498.4 1909 96.0
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 3075.4 1912 85.4
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 2872.8 1919 80.5
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 2863.9 1933 78.2
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 2840.8 1891 80.9
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1901.7 1825 61.5
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1884.8 1964 53.4
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1884.4 1685 58.3
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1880.5 1830 55.8
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1865.5 1964 54.2
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1861.3 1949 53.3
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1850.1 1969 52.7
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1847.8 1954 53.3
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1846.6 1955 53.2
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1844.7 1952 53.2
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1844.7 1917 52.9
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1841.6 1954 53.1
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1838.9 1848 53.6
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1825.1 1950 53.3
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1818.5 1971 51.7
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1816.2 1946 52.6
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1814.7 1833 54.2
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1804.6 1543 60.3
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1803.9 1942 52.9
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1799.3 1619 58.7
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1798.9 1951 53.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1787.7 1540 59.9
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1785.4 1929 51.9
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1785.0 1933 51.9
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1777.3 1845 53.7
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1775.4 1974 50.8
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1762.3 1863 52.9
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1758.4 1920 52.7
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1750.3 1816 53.4
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1748.0 1863 51.9
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1745.3 1955 51.5
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1744.9 1860 52.5
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1739.5 2106 48.4
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1739.2 1952 51.5
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1722.6 1831 51.8
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1718.7 1925 51.1
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1718.0 1902 50.4
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1717.2 1847 52.3
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1716.0 1819 52.2
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1714.9 1875 50.9
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1713.4 1835 52.4
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1708.3 1833 52.2
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1706.4 1893 50.6
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1703.3 1899 50.4
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1703.3 1905 50.8
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1702.2 1830 52.2
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1696.4 1873 50.6
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1696.0 1950 50.1
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1694.9 1945 50.1
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1693.7 1899 50.4
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1692.6 1866 51.2
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1689.1 1906 49.9
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1685.6 1863 51.3
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1681.8 1932 50.2
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1681.4 1851 51.5
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1677.9 1921 51.6
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1674.8 1910 50.2
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1674.1 1841 51.3
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1652.5 1956 49.0
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1640.2 1869 49.8
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1634.4 1898 49.3
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1634.4 1925 48.5
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1633.2 1849 49.9
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1626.3 1804 51.3
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1626.3 1804 51.3
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1619.8 1989 47.7
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1614.4 1885 48.7
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1608.2 1970 48.4
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1605.1 1921 49.0
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1601.6 1474 56.7
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1598.9 1870 48.8
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1597.8 1851 48.7
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1596.6 1879 48.4
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1594.7 1840 48.7
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1594.7 1837 49.9
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1593.2 1839 48.7
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1590.1 1890 48.0
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1581.2 1922 48.9
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1580.8 1294 61.7
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1576.2 1835 48.7
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1575.1 1825 50.5
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1569.3 1872 48.2
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1562.0 1878 47.9
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1561.2 1963 46.8
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1561.2 1825 48.9
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1559.7 1643 51.7
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1552.0 1934 48.3
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1536.2 1913 46.5
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1526.9 1860 47.6
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1508.8 1583 53.4
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1504.6 1991 45.1
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1432.9 1247 58.8
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1374.8 1865 43.5
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1370.9 1481 49.8
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1161.4 1153 59.0
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1126.7 1197 53.1
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1102.4 803 75.2
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 3.6e-304 1049.3 1834 38.0
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 1.2e-275 954.5 1683 36.8
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 4.0e-271 939.5 1813 34.8
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 4.1e-268 929.5 959 52.5
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.7e-266 924.1 1969 34.7
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 5.7e-262 909.1 897 54.0
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 4.9e-261 906.0 995 52.5
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.1e-257 894.8 1738 34.9
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 1.4e-223 781.6 1102 42.9
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 5.8e-214 749.6 985 46.8
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.0e-207 726.9 1099 41.6
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.0e-206 724.5 1445 34.2
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 7.1e-204 716.1 924 48.6
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.4e-191 675.2 976 41.5
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.3e-186 657.9 573 59.0
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 1.1e-185 655.6 1798 28.8
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 3.1e-151 541.2 468 60.5
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 4.0e-138 497.7 549 48.8
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.1e-131 475.3 566 46.3
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.9e-124 452.2 658 41.2
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 6.2e-123 447.2 559 44.7
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 8.6e-117 426.8 544 44.9
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 4.8e-91 341.3 295 59.3
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.1e-90 340.1 630 37.5
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 4.2e-79 301.6 461 41.4
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 2.1e-62 246.1 235 53.6
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 6.7e-53 214.5 366 36.3
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 1.1e-50 207.2 378 37.3
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.2e-46 193.7 348 37.1
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 7.0e-42 177.9 109 79.8
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 4.5e-41 175.3 181 48.1
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.5e-41 175.3 224 42.9
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.9e-39 169.9 535 31.0
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.6e-38 166.8 413 34.9
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.6e-38 166.8 601 30.0
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 6.8e-37 161.4 140 54.3
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 8.8e-37 161.0 162 51.9
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 8.3e-35 154.5 161 51.6
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.1e-34 154.1 1192 20.4
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-32 147.1 162 48.1
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 8.3e-27 127.9 531 26.9
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.7e-25 122.9 119 58.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.3e-24 120.6 111 54.1
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.8e-21 110.2 80 61.2
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.2e-20 107.5 228 35.5
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 3.4e-20 105.9 151 45.7
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 5.8e-20 105.1 92 54.3
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 8.3e-19 101.3 86 54.7
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 5.2e-13 82.0 54 66.7
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.2e-12 80.9 57 63.2
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 7.1e-10 71.6 371 24.5
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 4.6e-09 68.9 70 52.9
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 7.8e-09 68.2 140 34.3
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 3.0e-08 66.2 138 34.1
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 3.9e-08 65.9 188 33.5
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.5e-07 63.2 71 46.5
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.1e-06 60.1 96 39.6


User provided reference genes

Program Settings