Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.3e-207 726.1 365 100.0
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 2.4e-180 635.6 321 98.8
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 2.2e-173 612.5 323 96.0
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.8e-159 566.2 322 88.5
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 9.2e-156 553.9 328 85.7
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 7.8e-155 550.8 328 84.8
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 2.9e-154 548.9 320 86.2
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.6e-136 490.0 304 78.0
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 2.1e-136 489.6 326 75.2
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 6.8e-135 484.6 326 74.8
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 5.2e-127 458.4 314 74.2
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 1.2e-126 457.2 325 72.9
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 3.4e-126 455.7 349 67.3
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 3.2e-124 449.1 307 72.3
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 9.3e-124 447.6 331 71.9
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 2.1e-123 446.4 321 72.3
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 2.7e-123 446.0 347 66.0
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 3.5e-123 445.7 315 69.5
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 7.8e-123 444.5 324 71.6
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 7.8e-123 444.5 317 71.0
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 1.3e-122 443.7 309 71.2
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 4.3e-121 438.7 332 68.1
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.3e-120 437.2 311 72.3
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.3e-120 437.2 330 70.0
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 2.1e-120 436.4 321 70.4
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 2.1e-120 436.4 325 69.8
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 2.8e-120 436.0 316 71.8
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 4.8e-120 435.3 321 70.1
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 8.1e-120 434.5 320 69.1
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 8.1e-120 434.5 320 69.1
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 1.8e-119 433.3 344 66.9
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 2.4e-119 433.0 355 64.5
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 9.0e-119 431.0 322 67.1
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 9.0e-119 431.0 320 68.4
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-118 430.6 309 71.2
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-118 430.6 309 70.9
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-118 430.6 321 69.5
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.2e-118 430.6 321 69.5
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.2e-118 430.6 318 69.5
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 1.5e-118 430.3 311 71.7
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.5e-118 430.3 319 69.9
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.5e-118 430.3 326 68.4
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 2.0e-118 429.9 309 71.5
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 2.6e-118 429.5 306 71.2
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 7.6e-118 427.9 328 67.4
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 7.6e-118 427.9 336 64.3
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 7.6e-118 427.9 334 67.4
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 7.6e-118 427.9 319 69.9
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 9.9e-118 427.6 333 65.8
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 9.9e-118 427.6 323 67.5
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 1.7e-117 426.8 306 71.9
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.7e-117 426.8 346 65.6
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 1.7e-117 426.8 341 65.7
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.7e-117 426.8 332 67.2
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 2.9e-117 426.0 318 70.1
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.9e-117 426.0 318 70.1
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 4.9e-117 425.2 310 69.7
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 4.9e-117 425.2 311 70.4
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 6.4e-117 424.9 321 67.9
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 6.4e-117 424.9 334 66.8
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 8.4e-117 424.5 310 70.3
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 1.4e-116 423.7 310 70.0
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 1.4e-116 423.7 328 67.4
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 1.4e-116 423.7 328 66.5
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 1.9e-116 423.3 311 69.8
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 1.9e-116 423.3 326 67.5
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 3.2e-116 422.5 317 68.1
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 4.2e-116 422.2 341 64.8
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.2e-116 422.2 321 68.8
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 5.4e-116 421.8 318 68.2
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 5.4e-116 421.8 357 65.8
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 7.1e-116 421.4 321 68.8
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 1.2e-115 420.6 318 67.3
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.2e-115 420.6 338 65.7
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 2.7e-115 419.5 312 69.2
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 2.7e-115 419.5 315 68.9
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 3.5e-115 419.1 323 67.2
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 3.5e-115 419.1 315 68.6
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 3.5e-115 419.1 315 68.3
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 7.9e-115 417.9 315 68.3
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 7.9e-115 417.9 312 69.6
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.0e-114 417.5 328 67.1
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 1.0e-114 417.5 336 65.8
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.7e-114 416.8 315 68.6
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 2.3e-114 416.4 315 68.6
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 3.0e-114 416.0 315 69.2
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 3.0e-114 416.0 319 67.1
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 3.0e-114 416.0 324 65.7
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 3.0e-114 416.0 322 66.8
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 3.9e-114 415.6 313 69.6
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.1e-113 414.1 329 66.3
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.5e-113 413.7 316 67.4
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 2.5e-113 412.9 313 67.1
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 4.3e-113 412.1 306 68.0
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 2.8e-112 409.5 308 65.9
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 6.2e-112 408.3 317 65.3
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.8e-111 406.8 317 65.9
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 2.4e-111 406.4 339 63.4
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 6.9e-111 404.8 332 64.5
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 9.0e-111 404.4 323 65.9
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 3.4e-110 402.5 309 69.3
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.7e-109 400.2 311 65.9
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.9e-109 399.4 330 63.6
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 3.2e-108 396.0 310 64.2
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 3.2e-108 396.0 302 65.6
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 9.3e-108 394.4 310 65.2
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 3.5e-107 392.5 294 66.7
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 8.7e-106 387.9 317 65.6
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.1e-105 387.5 311 63.3
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.5e-105 386.3 332 61.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.5e-105 386.3 283 69.6
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 4.0e-103 379.0 304 63.8
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 4.5e-102 375.6 309 60.8
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 5.8e-102 375.2 335 62.4
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 1.3e-98 364.0 334 59.3
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.8e-98 363.6 306 61.1
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 1.5e-97 360.5 275 68.4
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 3.3e-97 359.4 308 61.0
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 3.7e-96 355.9 306 60.8
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 3.1e-95 352.8 318 56.0
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 2.2e-93 346.7 316 55.4
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 1.1e-92 344.4 331 57.1
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 1.1e-92 344.4 316 56.3
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 2.5e-92 343.2 316 55.7
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 7.9e-91 338.2 331 53.2
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.9e-89 333.6 311 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 8.2e-88 328.2 314 56.7
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 2.4e-87 326.6 311 56.9
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.7e-85 320.5 356 52.2
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.9e-84 317.0 325 52.9
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 9.4e-84 314.7 325 52.6
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-83 313.5 296 56.1
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.1e-83 313.5 318 54.7
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 6.1e-83 312.0 325 53.2
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.4e-82 310.8 271 60.5
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 2.2e-80 303.5 325 51.7
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 3.7e-80 302.8 256 64.8
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 4.5e-78 295.8 296 53.4
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 9.4e-76 288.1 240 65.4
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 2.1e-75 287.0 338 47.3
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 3.6e-75 286.2 323 52.3
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 6.1e-75 285.4 312 52.2
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 1.8e-74 283.9 368 45.1
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 1.5e-73 280.8 368 44.8
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 2.6e-70 270.0 251 58.6
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 2.2e-69 266.9 324 47.2
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.2e-69 266.9 324 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.0e-66 258.1 309 48.2
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.0e-65 253.8 261 54.8
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 2.7e-59 233.4 263 52.1
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 2.3e-50 203.8 166 65.1
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.8e-50 202.2 203 53.7
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.8e-50 202.2 203 53.7
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.8e-50 202.2 203 53.7
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 4.4e-49 199.5 319 39.2
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 5.6e-44 182.6 114 75.4
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-42 177.9 239 51.9
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.5e-33 147.9 120 62.5
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 2.6e-33 147.1 115 64.3
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 3.7e-32 143.3 93 73.1
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 8.6e-29 132.1 112 60.7
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.2e-23 113.6 91 62.6
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.2e-23 113.6 91 62.6
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 1.6e-22 111.3 117 51.3
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.0e-21 108.6 84 65.5
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.0e-21 108.6 84 65.5
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.0e-21 108.6 84 65.5
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 3.3e-20 103.6 54 88.9
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 2.8e-19 100.5 54 87.0
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.1e-18 97.1 54 83.3
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.8e-18 95.9 135 46.7
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 2.2e-16 90.9 102 53.9
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 2.4e-15 87.4 50 80.0
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 6.0e-14 82.8 50 76.0
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 3.6e-11 73.6 139 38.8
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 8.1e-11 72.4 56 60.7
FAN10G3644 Fragaria x ananassa HOM05D003673 ORTHO05D025527 8.1e-11 72.4 139 38.1
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 4.0e-10 70.1 139 38.1
FAN25G1183 Fragaria x ananassa HOM05D003673 ORTHO05D025527 5.2e-10 69.7 132 39.4
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 4.9e-08 63.2 38 68.4
FvH4_6g00910 Fragaria vesca HOM05D003673 ORTHO05D025527 3.2e-07 60.5 140 33.6
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 3.5e-06 57.0 129 38.0


User provided reference genes

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