Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g025910.3 Solanum lycopersicum HOM05D000513 ORTHO05D392486 2.2e-19 97.8 45 100.0
Solyc02g088000.3 Solanum lycopersicum HOM05D000513 ORTHO05D005338 5.0e-11 70.1 35 88.6
Sopen02g032740 Solanum pennellii HOM05D000513 ORTHO05D005338 5.0e-11 70.1 35 88.6
PGSC0003DMG400001328 Solanum tuberosum HOM05D000513 ORTHO05D005338 5.0e-11 70.1 35 88.6
Nitab4.5_0000564g0020 Nicotiana tabacum HOM05D000513 ORTHO05D005338 3.2e-10 67.4 35 82.9
Nitab4.5_0002980g0050 Nicotiana tabacum HOM05D000513 ORTHO05D005338 3.2e-10 67.4 35 82.9
vmacro18187 Vaccinium macrocarpon HOM05D000513 ORTHO05D005338 4.2e-10 67.0 32 87.5
ECA238G0428 Erigeron canadensis HOM05D000513 ORTHO05D005338 5.5e-10 66.6 35 77.1
AT3G01180 Arabidopsis thaliana HOM05D000513 ORTHO05D005338 9.3e-10 65.9 32 87.5
Thhalv10020091m.g Eutrema salsugineum HOM05D000513 ORTHO05D005338 9.3e-10 65.9 32 87.5
Lj4A110T78 Lonicera japonica HOM05D000513 ORTHO05D005338 9.3e-10 65.9 32 84.4
Peaxi162Scf00129g00129 Petunia axillaris HOM05D000513 ORTHO05D005338 9.3e-10 65.9 35 80.0
Sp3g00920 Schrenkiella parvula HOM05D000513 ORTHO05D005338 9.3e-10 65.9 32 87.5
Ah.10g031590 Amaranthus hybridus HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 84.4
AL3G11070 Arabidopsis lyrata HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 87.5
BcaC05g30487 Brassica carinata HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 87.5
BcaC09g47673 Brassica carinata HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 87.5
A05p44780 Brassica napus HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 87.5
BNapus_Darmor_BZH_scaffold_97p00120 Brassica napus HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 87.5
C09p75370 Brassica napus HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 87.5
BolC1t05933H Brassica oleracea HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 87.5
BolC5t35123H Brassica oleracea HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 87.5
BraA05t23179Z Brassica rapa HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 87.5
HanXRQChr14g0449751 Helianthus annuus HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 81.2
Oeu027855.1 Olea europaea HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 84.4
Oeu027856.1 Olea europaea HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 84.4
Rhsim08G0070300 Rhododendron simsii HOM05D000513 ORTHO05D005338 1.2e-09 65.5 32 84.4
CAN.G206.155 Capsicum annuum HOM05D000513 ORTHO05D005338 2.7e-09 64.3 35 77.1
Hund15597 Selenicereus undatus HOM05D000513 ORTHO05D005338 2.7e-09 64.3 32 84.4
Thecc.04G083300 Theobroma cacao HOM05D000513 ORTHO05D005338 2.7e-09 64.3 35 80.0
Gohir.D09G014100 Gossypium hirsutum HOM05D000513 ORTHO05D005338 3.5e-09 63.9 35 77.1
Gorai.006G016400 Gossypium raimondii HOM05D000513 ORTHO05D005338 3.5e-09 63.9 35 77.1
Actinidia38784 Actinidia chinensis HOM05D000513 ORTHO05D005338 4.6e-09 63.5 32 84.4
CARHR075860 Cardamine hirsuta HOM05D000513 ORTHO05D005338 4.6e-09 63.5 32 84.4
Dinv33768 Davidia involucrata HOM05D000513 ORTHO05D005338 4.6e-09 63.5 32 81.2
HanXRQChr09g0265221 Helianthus annuus HOM05D000513 ORTHO05D005338 4.6e-09 63.5 32 81.2
CSS0032498 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 6.1e-09 63.2 32 81.2
CSS0035890 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 6.1e-09 63.2 32 81.2
AUR62034405 Chenopodium quinoa HOM05D000513 ORTHO05D005338 6.1e-09 63.2 32 84.4
AUR62039808 Chenopodium quinoa HOM05D000513 ORTHO05D005338 6.1e-09 63.2 32 84.4
Migut.H00928 Erythranthe guttata HOM05D000513 ORTHO05D005338 6.1e-09 63.2 32 78.1
MSTRG.3241 Avicennia marina HOM05D000513 ORTHO05D005338 1.0e-08 62.4 35 74.3
CSS0041358 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 1.0e-08 62.4 32 84.4
Cfa007565 Carpinus fangiana HOM05D000513 ORTHO05D005338 1.0e-08 62.4 32 81.2
Cc07_g03430 Coffea canephora HOM05D000513 ORTHO05D005338 1.0e-08 62.4 32 78.1
Eucgr.J01349 Eucalyptus grandis HOM05D000513 ORTHO05D005338 1.0e-08 62.4 32 78.1
Actinidia38766 Actinidia chinensis HOM05D000513 ORTHO05D005338 1.3e-08 62.0 32 81.2
ECA232G4228 Erigeron canadensis HOM05D000513 ORTHO05D005338 1.3e-08 62.0 32 78.1
Sc10g0003570 Simmondsia chinensis HOM05D000513 ORTHO05D005338 1.3e-08 62.0 32 78.1
TWI32G0103 Tripterygium wilfordii HOM05D000513 ORTHO05D005338 1.3e-08 62.0 32 81.2
Aa31LG5G12440 Aethionema arabicum HOM05D000513 ORTHO05D005338 1.8e-08 61.6 32 81.2
FvH4_6g48410 Fragaria vesca HOM05D000513 ORTHO05D005338 1.8e-08 61.6 32 78.1
FAN02G2319 Fragaria x ananassa HOM05D000513 ORTHO05D005338 1.8e-08 61.6 32 78.1
FAN09G0920 Fragaria x ananassa HOM05D000513 ORTHO05D005338 1.8e-08 61.6 32 78.1
FAN14G5629 Fragaria x ananassa HOM05D000513 ORTHO05D005338 1.8e-08 61.6 32 78.1
MD09G1052000 Malus domestica HOM05D000513 ORTHO05D005338 1.8e-08 61.6 32 78.1
Prupe.3G266700 Prunus persica HOM05D000513 ORTHO05D005338 1.8e-08 61.6 32 81.2
RcHm_v2.0_Chr2g0168331 Rosa chinensis HOM05D000513 ORTHO05D005338 1.8e-08 61.6 32 78.1
Carub.0003s0097 Capsella rubella HOM05D000513 ORTHO05D005338 2.3e-08 61.2 32 81.2
CiPaw.03G025800 Carya illinoinensis HOM05D000513 ORTHO05D005338 2.3e-08 61.2 32 78.1
MD00G1130900 Malus domestica HOM05D000513 ORTHO05D005338 2.3e-08 61.2 32 78.1
TPR.G8813 Trifolium pratense HOM05D000513 ORTHO05D005338 2.3e-08 61.2 35 77.1
THA.LOC104822355 Tarenaya hassleriana HOM05D000513 ORTHO05D005338 3.0e-08 60.8 32 81.2
Ah.12g059870 Amaranthus hybridus HOM05D000513 ORTHO05D005338 3.9e-08 60.5 35 77.1
arahy.Tifrunner.gnm1.ann1.27CGVJ Arachis hypogaea HOM05D000513 ORTHO05D005338 3.9e-08 60.5 32 78.1
arahy.Tifrunner.gnm1.ann1.9G3TAM Arachis hypogaea HOM05D000513 ORTHO05D005338 3.9e-08 60.5 32 78.1
EL10Ac2g02984 Beta vulgaris HOM05D000513 ORTHO05D005338 3.9e-08 60.5 32 78.1
MELO3C009861.2 Cucumis melo HOM05D000513 ORTHO05D005338 3.9e-08 60.5 32 78.1
Lsat_1_v5_gn_2_88360 Lactuca sativa HOM05D000513 ORTHO05D005338 3.9e-08 60.5 32 75.0
SalBow1G3534 Salvia bowleyana HOM05D000513 ORTHO05D005338 3.9e-08 60.5 32 81.2
SalBow1G6141 Salvia bowleyana HOM05D000513 ORTHO05D005338 3.9e-08 60.5 32 81.2
Haze_14520 Corylus avellana HOM05D000513 ORTHO05D005338 5.1e-08 60.1 32 81.2
GSVIVG01011429001 Vitis vinifera HOM05D000513 ORTHO05D005338 5.1e-08 60.1 35 74.3
Glyma.19G022900 Glycine max HOM05D000513 ORTHO05D005338 6.7e-08 59.7 32 78.1
PSO013G0263 Papaver somniferum HOM05D000513 ORTHO05D005338 6.7e-08 59.7 32 75.0
PSO832G4046 Papaver somniferum HOM05D000513 ORTHO05D005338 6.7e-08 59.7 32 75.0
Cfa007563 Carpinus fangiana HOM05D000513 ORTHO05D005338 8.7e-08 59.3 32 78.1
CiPaw.04G016900 Carya illinoinensis HOM05D000513 ORTHO05D005338 8.7e-08 59.3 32 75.0
Ciclev10011124m.g Citrus clementina HOM05D000513 ORTHO05D005338 8.7e-08 59.3 32 78.1
CsaV3_3G041330 Cucumis sativus L. HOM05D000513 ORTHO05D005338 8.7e-08 59.3 32 78.1
CsaV3_3G041360 Cucumis sativus L. HOM05D000513 ORTHO05D011790 8.7e-08 59.3 32 78.1
PGR004G2567 Punica granatum HOM05D000513 ORTHO05D005338 8.7e-08 59.3 32 81.2
ClCG10G015190 Citrullus lanatus HOM05D000513 ORTHO05D005338 1.1e-07 58.9 32 78.1
DCAR_005562 Daucus carota HOM05D000513 ORTHO05D005338 1.1e-07 58.9 32 71.9
Duzib147G1357 Durio zibethinus HOM05D000513 ORTHO05D005338 1.1e-07 58.9 35 74.3
Dinv34148 Davidia involucrata HOM05D000513 ORTHO05D005338 1.5e-07 58.5 32 75.0
Glyma.13G062700 Glycine max HOM05D000513 ORTHO05D005338 1.5e-07 58.5 35 68.6
Gohir.A09G015500 Gossypium hirsutum HOM05D000513 ORTHO05D005338 1.5e-07 58.5 35 71.4
Lj1g0028208 Lotus japonicus HOM05D000513 ORTHO05D005338 1.5e-07 58.5 32 78.1
Atru.chr8.178 Acer truncatum HOM05D000513 ORTHO05D005338 1.9e-07 58.2 35 71.4
CANSAT64G2318 Cannabis sativa HOM05D000513 ORTHO05D005338 1.9e-07 58.2 35 74.3
Nn3g17255 Nelumbo nucifera HOM05D000513 ORTHO05D005338 1.9e-07 58.2 32 75.0
VMungo0464G2006 Vigna mungo HOM05D000513 ORTHO05D005338 2.5e-07 57.8 35 68.6
COL.COLO4_08442 Corchorus olitorius HOM05D000513 ORTHO05D005338 3.3e-07 57.4 35 71.4
Duzib187G1959 Durio zibethinus HOM05D000513 ORTHO05D005338 3.3e-07 57.4 32 71.9
Gohir.D07G211700 Gossypium hirsutum HOM05D000513 ORTHO05D005338 3.3e-07 57.4 35 71.4
Gorai.001G239200 Gossypium raimondii HOM05D000513 ORTHO05D005338 3.3e-07 57.4 35 71.4
TAR374G1602 Trochodendron aralioides HOM05D000513 ORTHO05D005338 3.3e-07 57.4 32 75.0
VMungo1383G0284 Vigna mungo HOM05D000513 ORTHO05D005338 3.3e-07 57.4 32 71.9
Manes.02G046733 Manihot esculenta HOM05D000513 ORTHO05D005338 4.3e-07 57.0 32 71.9
Potri.017G084100 Populus trichocarpa HOM05D000513 ORTHO05D005338 4.3e-07 57.0 32 75.0
Lj2g0016593 Lotus japonicus HOM05D000513 ORTHO05D005338 5.7e-07 56.6 35 71.4
Sabra17G0074200 Salix brachista HOM05D000513 ORTHO05D005338 5.7e-07 56.6 32 75.0
Cpa.g.c36490 Carica papaya HOM05D000513 ORTHO05D005338 7.4e-07 56.2 35 68.6
Lalb_Chr21g0318691 Lupinus albus HOM05D000513 ORTHO05D005338 7.4e-07 56.2 32 68.8
Medtr6g012380 Medicago truncatula HOM05D000513 ORTHO05D005338 9.7e-07 55.8 35 68.6
Zm00001eb222830 Zea mays HOM05D000513 ORTHO05D005338 9.7e-07 55.8 35 62.9
arahy.Tifrunner.gnm1.ann1.UUZ1A7 Arachis hypogaea HOM05D000513 ORTHO05D005338 1.3e-06 55.5 32 71.9
Ca_04285_v3 Cicer arietinum L. HOM05D000513 ORTHO05D005338 1.3e-06 55.5 35 71.4
Ca_29846_v3 Cicer arietinum L. HOM05D000513 ORTHO05D005338 1.3e-06 55.5 35 71.4
Gohir.A07G205600 Gossypium hirsutum HOM05D000513 ORTHO05D005338 1.3e-06 55.5 35 71.4
MBI02_g15396_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D005338 1.3e-06 55.5 32 71.9
Phvul.004G029100 Phaseolus vulgaris HOM05D000513 ORTHO05D005338 1.6e-06 55.1 35 65.7
Sed0000175 Sechium edule HOM05D000513 ORTHO05D005338 1.6e-06 55.1 35 68.6
SGA_v2.0_scaffold499G52491 Striga asiatica HOM05D000513 ORTHO05D005338 1.6e-06 55.1 35 62.9
Aqoxy3G03405 Aquilegia oxysepala HOM05D000513 ORTHO05D005338 2.2e-06 54.7 35 68.6
Aqoxy3G03409 Aquilegia oxysepala HOM05D000513 ORTHO05D005338 2.2e-06 54.7 35 68.6
Os06g0229800 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 2.2e-06 54.7 35 62.9
TAR622G0870 Trochodendron aralioides HOM05D000513 ORTHO05D005338 2.2e-06 54.7 32 75.0
ATR0564G338 Amborella trichopoda HOM05D000513 ORTHO05D005338 2.8e-06 54.3 36 63.9
Manes.01G091700 Manihot esculenta HOM05D000513 ORTHO05D005338 2.8e-06 54.3 32 71.9
Os10g0437600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 2.8e-06 54.3 35 65.7
Sed0017521 Sechium edule HOM05D000513 ORTHO05D005338 2.8e-06 54.3 35 68.6
Os02g0744700 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 3.7e-06 53.9 32 68.8
Phvul.008G036600 Phaseolus vulgaris HOM05D000513 ORTHO05D005338 3.7e-06 53.9 32 68.8
Psat1g073520 Pisum sativum HOM05D000513 ORTHO05D005338 3.7e-06 53.9 35 68.6
QL02p082359 Quercus lobata HOM05D000513 ORTHO05D005338 3.7e-06 53.9 35 60.0
Zm00001eb279740 Zea mays HOM05D000513 ORTHO05D005338 3.7e-06 53.9 35 62.9
Lalb_Chr02g0159331 Lupinus albus HOM05D000513 ORTHO05D005338 4.8e-06 53.5 36 61.1
CDE02G4400 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 6.3e-06 53.1 32 68.8
CDE09G0475 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 6.3e-06 53.1 32 68.8
Oeu039526.1 Olea europaea HOM05D000513 ORTHO05D005338 6.3e-06 53.1 32 68.8


User provided reference genes

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