Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.8e-61 238.0 126 100.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.8e-61 238.0 126 100.0
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 3.8e-61 238.0 126 100.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.1e-60 236.5 126 99.2
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 7.2e-60 233.8 126 97.6
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.2e-58 227.6 126 93.7
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.7e-56 221.5 126 89.7
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.7e-56 221.5 126 89.7
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 7.0e-55 217.2 126 88.1
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 1.2e-54 216.5 126 88.9
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.2e-54 216.5 126 86.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.2e-54 216.5 126 88.1
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.6e-54 216.1 126 87.3
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 5.9e-54 214.2 126 84.9
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 5.9e-54 214.2 125 88.8
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.7e-53 212.6 126 83.3
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 3.9e-53 211.5 125 84.0
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 5.0e-53 211.1 125 85.6
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 5.0e-53 211.1 126 84.1
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 8.6e-53 210.3 126 85.7
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.1e-52 209.9 126 83.3
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.1e-52 209.9 124 86.3
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.5e-52 209.5 126 83.3
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.5e-52 209.5 126 84.9
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 1.9e-52 209.1 126 83.3
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 2.5e-52 208.8 127 83.5
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.5e-52 208.8 125 84.8
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 4.3e-52 208.0 126 82.5
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 9.5e-52 206.8 126 81.7
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.2e-51 206.5 126 80.2
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.2e-51 206.5 126 84.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.2e-51 206.5 126 82.5
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 2.1e-51 205.7 126 82.5
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 6.2e-51 204.1 126 82.5
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 6.2e-51 204.1 126 80.2
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 8.0e-51 203.8 126 81.0
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 8.0e-51 203.8 126 81.0
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 8.0e-51 203.8 126 82.5
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.8e-50 202.6 126 81.0
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.8e-50 202.6 126 81.7
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 2.3e-50 202.2 126 84.1
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 3.1e-50 201.8 126 79.4
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.1e-50 201.8 126 80.2
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 4.0e-50 201.4 126 79.4
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 5.2e-50 201.1 126 79.4
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 8.9e-50 200.3 126 79.4
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.2e-49 199.9 126 80.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.2e-49 199.9 126 80.2
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.5e-49 199.5 126 79.4
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.0e-49 199.1 126 79.4
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 2.0e-49 199.1 126 77.8
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.0e-49 199.1 127 80.3
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 2.0e-49 199.1 127 81.9
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.6e-49 198.7 122 80.3
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 4.4e-49 198.0 126 80.2
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 4.4e-49 198.0 126 79.4
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.4e-49 198.0 126 80.2
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 4.4e-49 198.0 130 77.7
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 5.8e-49 197.6 126 79.4
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 9.8e-49 196.8 126 78.6
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.3e-48 196.4 126 82.5
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.3e-48 196.4 126 77.0
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.7e-48 196.1 126 79.4
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 1.7e-48 196.1 126 79.4
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 3.7e-48 194.9 126 76.2
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.7e-48 194.9 126 76.2
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 4.9e-48 194.5 126 77.0
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.9e-48 194.5 125 76.0
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 4.9e-48 194.5 126 77.8
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 4.9e-48 194.5 118 83.9
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 6.4e-48 194.1 126 77.0
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 6.4e-48 194.1 126 77.0
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 8.3e-48 193.7 126 77.0
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.1e-47 193.4 126 75.4
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.4e-47 193.0 126 77.8
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.4e-47 192.2 126 76.2
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 2.4e-47 192.2 125 76.0
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.2e-47 191.8 126 76.2
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 4.1e-47 191.4 126 74.6
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 5.4e-47 191.0 107 90.7
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.2e-46 189.9 126 76.2
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.2e-46 189.9 126 76.2
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 2.0e-46 189.1 126 74.6
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 2.7e-46 188.7 126 73.0
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.7e-46 188.7 124 77.4
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.6e-46 188.0 126 75.4
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 4.6e-46 188.0 127 75.6
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 4.6e-46 188.0 126 74.6
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 6.0e-46 187.6 161 63.4
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.0e-46 187.6 126 75.4
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.0e-46 187.6 126 75.4
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 7.8e-46 187.2 126 74.6
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 7.8e-46 187.2 126 74.6
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 7.8e-46 187.2 114 86.0
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 7.8e-46 187.2 123 77.2
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.0e-45 186.8 126 73.8
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.7e-45 186.0 126 73.8
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 5.0e-45 184.5 126 73.0
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.1e-44 183.3 143 67.1
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.9e-44 182.6 126 76.2
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-44 182.6 126 72.2
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 3.3e-44 181.8 126 71.4
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.2e-43 179.9 105 85.7
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 2.1e-43 179.1 119 74.8
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.1e-43 179.1 106 86.8
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.8e-43 178.7 124 71.8
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 3.6e-43 178.3 124 71.0
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 3.6e-43 178.3 124 71.0
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 3.6e-43 178.3 109 84.4
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.1e-42 176.8 124 71.0
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.1e-42 176.8 126 69.0
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.8e-42 176.0 110 80.0
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 4.9e-40 167.9 133 66.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.4e-39 166.4 111 78.4
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 7.1e-39 164.1 124 64.5
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.1e-38 162.5 125 67.2
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.0e-37 160.2 126 65.9
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.9e-37 158.3 125 64.8
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.9e-36 156.0 95 76.8
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.6e-36 154.5 124 60.5
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.6e-35 152.9 123 64.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.6e-35 151.8 125 59.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-34 150.2 109 69.7
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.3e-34 149.1 101 77.2
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.9e-34 147.1 109 69.7
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 8.9e-34 147.1 125 64.0
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-33 146.4 113 67.3
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.5e-33 146.4 83 94.0
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-32 142.5 129 61.2
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 1.6e-30 136.3 91 75.8
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.5e-30 135.2 97 70.1
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.6e-30 134.8 83 83.1
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 7.8e-30 134.0 126 57.1
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 5.1e-29 131.3 117 58.1
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 8.6e-29 130.6 83 83.1
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.1e-28 130.2 133 56.4
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.1e-28 130.2 133 56.4
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 1.1e-28 130.2 115 63.5
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 4.3e-28 128.3 103 59.2
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.2e-27 126.7 113 57.5
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-27 125.2 126 57.1
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 8.9e-26 120.6 128 53.9
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 2.2e-24 115.9 138 49.3
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 3.5e-22 108.6 83 67.5
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.0e-22 107.8 82 68.3
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-20 103.2 79 64.6
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.9e-16 88.2 50 90.0
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.1e-15 87.0 74 59.5
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.7e-14 82.4 48 75.0
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 4.6e-14 81.6 51 82.4
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.7e-13 79.7 51 76.5
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 6.6e-13 77.8 101 41.6
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.9e-12 76.3 58 63.8
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.3e-11 73.6 104 38.5
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.4e-10 69.3 105 42.9
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.3e-08 63.5 41 65.9
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 4.9e-08 61.6 50 64.0
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 4.9e-08 61.6 37 73.0
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-06 56.2 45 62.2


User provided reference genes

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