Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 3475.3 1859 100.0
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 3438.3 1859 99.0
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 3124.7 1866 89.3
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 3026.9 1865 86.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2552.7 1904 73.3
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2479.5 1898 71.2
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2449.1 1868 70.1
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2436.4 1866 70.9
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2380.5 1910 69.6
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2375.5 1883 69.4
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2372.0 1906 69.2
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2367.0 1893 69.9
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2359.3 1893 68.1
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2348.5 1885 69.1
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2346.2 1909 69.2
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2341.2 1890 68.5
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2338.9 1904 67.8
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2338.5 1887 69.2
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2335.8 1905 69.2
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2334.3 1897 68.7
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2334.3 1890 68.1
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2334.3 1902 67.6
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2332.8 1930 68.9
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2329.7 1905 67.8
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2327.0 1900 68.3
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2325.8 1905 67.2
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2318.9 1932 66.7
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2315.8 1920 65.9
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2313.9 1889 67.6
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2313.1 1895 68.3
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2312.0 1903 66.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2301.2 1874 69.2
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2301.2 1902 67.4
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2298.9 1932 66.8
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2289.6 1893 66.9
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2289.2 1886 68.7
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2285.0 1971 65.7
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2280.4 1901 66.6
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2276.5 1887 67.3
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2276.1 1890 66.0
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2271.1 1877 67.7
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2255.3 1891 66.3
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2253.4 1900 66.4
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2245.3 2114 61.3
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2223.7 1869 66.0
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2209.9 1913 64.8
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2203.7 1874 66.5
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2202.9 1890 64.9
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2202.6 1935 65.3
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2198.7 1737 71.0
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2196.0 1997 63.3
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2195.6 1888 63.3
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2194.9 1920 65.9
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2194.1 1959 62.4
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2190.6 1883 66.4
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2188.3 1733 68.1
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2185.2 1740 70.4
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2166.3 1897 64.4
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2163.3 1890 64.8
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2158.3 1875 64.7
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2127.4 1911 64.7
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2123.2 2105 60.0
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2121.7 1884 64.4
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2120.9 1902 62.4
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2119.0 1885 63.6
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2114.7 2266 54.5
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2110.5 1887 64.2
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2109.3 1903 63.5
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2090.5 1877 63.3
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2083.9 1849 63.6
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2075.8 1779 65.5
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2073.9 1877 63.5
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2067.4 1884 60.1
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2067.0 1903 63.3
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2065.0 1877 63.1
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2062.7 1905 62.8
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2061.6 1877 62.8
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2051.9 1909 62.9
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2050.0 1877 62.5
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2049.6 1877 62.0
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2044.2 1907 61.5
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2039.6 1892 62.9
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2029.6 1911 62.3
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2026.9 1860 62.6
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2001.5 1786 63.7
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1977.6 1362 75.0
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1960.3 1888 60.7
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1959.9 1238 86.3
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1935.6 1262 85.1
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1880.5 1514 70.5
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1817.7 1503 67.6
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1808.9 1854 55.2
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1805.8 1997 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1740.7 1984 52.2
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1630.5 1872 52.7
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1612.0 1770 52.5
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1573.1 1880 52.4
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1418.3 936 76.4
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1388.6 1198 65.9
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1371.3 1082 69.4
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1334.7 1211 65.6
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1300.4 1473 55.9
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 1196.4 678 91.7
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1151.0 850 69.9
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1136.7 940 65.6
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 1.6e-301 1040.4 1133 57.1
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 2.4e-300 1036.6 1357 44.4
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 4.7e-280 969.1 1133 54.0
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 3.5e-267 926.4 675 70.4
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 9.2e-220 768.8 1117 44.9
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 5.6e-217 759.6 869 57.9
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 1.4e-212 745.0 1286 36.9
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.5e-209 734.9 954 51.0
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.1e-193 682.2 511 82.6
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 3.3e-193 680.6 448 78.8
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.3e-184 652.1 366 90.4
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.9e-172 611.7 367 86.1
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 1.7e-168 598.6 374 80.7
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 7.5e-153 546.6 1247 33.2
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.2e-136 491.9 364 68.7
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 5.8e-113 414.1 238 90.3
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.0e-109 403.3 261 82.8
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.7e-107 394.4 499 49.1
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.4e-106 392.9 284 70.1
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 5.6e-92 344.4 1383 25.2
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.8e-90 339.3 214 76.6
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 7.6e-89 334.0 299 61.2
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.0e-86 324.3 198 80.3
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 8.7e-85 320.5 1450 25.5
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.5e-71 275.8 554 39.2
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 3.2e-71 275.4 263 57.4
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.7e-61 240.7 513 34.7
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 3.7e-59 235.3 227 59.5
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 6.9e-58 231.1 170 68.8
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.1e-54 218.0 236 53.4
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 5.1e-53 214.9 190 60.5
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.4e-52 211.1 274 50.4
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.2e-49 203.8 176 61.9
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 6.5e-48 198.0 245 50.6
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 4.2e-47 195.3 163 59.5
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.7e-46 192.6 392 40.1
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.1e-38 166.4 106 76.4
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 5.7e-36 158.3 89 82.0
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.1e-34 154.1 223 47.5
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 4.8e-27 128.6 108 65.7
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 2.4e-26 126.3 75 84.0
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 2.4e-26 126.3 105 67.6
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 3.1e-26 125.9 262 37.0
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.6e-25 123.6 116 61.2
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 5.9e-25 121.7 82 74.4
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 6.5e-24 118.2 69 84.1
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 4.7e-22 112.1 75 77.3
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 4.7e-22 112.1 75 73.3
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 6.1e-22 111.7 87 63.2
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 4.1e-18 99.0 128 48.4
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 2.3e-16 93.2 80 61.2
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 6.6e-16 91.7 75 61.3
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 1.1e-15 90.9 58 74.1
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 1.1e-15 90.9 58 74.1
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 3.3e-15 89.4 82 56.1
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 9.5e-15 87.8 58 72.4
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 2.6e-12 79.7 41 90.2
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 3.4e-12 79.3 79 62.0
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 7.5e-12 78.2 54 70.4
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.2e-11 76.6 56 64.3
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 8.3e-11 74.7 58 69.0
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.4e-10 73.9 89 43.8
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.4e-10 73.9 74 56.8
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.8e-10 73.6 50 78.0
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 5.4e-10 72.0 95 44.2
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 3.9e-08 65.9 111 36.9
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 6.6e-08 65.1 103 39.8


User provided reference genes

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