Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1550.0 750 100.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1495.3 729 99.5
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1377.8 729 91.8
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1377.1 729 91.8
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 0.0e+00 1332.8 720 88.6
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1129.0 729 72.8
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 729 72.7
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1121.7 727 72.6
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1116.3 727 72.6
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1114.4 727 72.5
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1111.7 727 71.5
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1111.3 727 71.4
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1110.5 740 69.7
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1107.4 727 72.4
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1106.7 727 71.4
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1103.2 726 71.1
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1097.8 729 71.1
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1089.3 727 71.5
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1089.3 725 71.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1086.6 725 69.9
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1085.9 763 67.9
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1085.5 731 68.9
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1084.7 727 69.9
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1083.9 725 69.9
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1082.8 725 69.9
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1082.4 725 69.9
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1080.5 725 69.5
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1080.1 729 70.2
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1079.7 725 69.7
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1078.9 724 69.9
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1077.0 729 70.0
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1076.6 725 69.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1075.8 729 70.1
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 5.1e-312 1074.3 729 69.8
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 7.7e-311 1070.1 729 69.8
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 1.0e-310 1069.7 728 69.6
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 1.3e-310 1069.3 724 69.3
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.0e-310 1068.1 733 68.5
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 1.9e-309 1065.4 725 68.1
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 1.9e-309 1065.4 739 69.0
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 2.5e-309 1065.1 725 69.7
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 7.3e-309 1063.5 731 68.5
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 9.6e-309 1063.1 684 73.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.0e-306 1055.4 725 69.7
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 2.6e-306 1055.0 729 68.4
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 3.4e-306 1054.7 727 68.0
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 4.4e-306 1054.3 727 68.0
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 4.4e-306 1054.3 698 70.9
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 1.3e-305 1052.7 727 68.2
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.8e-305 1051.2 726 68.3
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 4.9e-305 1050.8 727 67.7
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 4.9e-305 1050.8 725 68.7
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 1.9e-304 1048.9 729 68.9
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 2.4e-304 1048.5 729 67.4
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 2.4e-304 1048.5 845 61.1
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 2.7e-303 1045.0 729 68.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 6.0e-303 1043.9 726 67.8
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 1.1e-301 1039.6 725 67.9
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 2.8e-300 1035.0 729 67.6
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 2.8e-300 1035.0 729 67.6
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 2.8e-300 1035.0 729 67.4
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 3.6e-300 1034.6 729 67.2
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 4.8e-300 1034.2 729 67.5
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 2.4e-299 1031.9 729 67.2
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 3.1e-299 1031.6 727 68.1
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 9.0e-299 1030.0 731 66.5
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 9.0e-299 1030.0 727 68.0
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.2e-298 1029.6 729 66.4
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.7e-297 1025.8 726 66.8
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 6.4e-297 1023.8 725 66.3
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 1.4e-296 1022.7 731 65.9
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 1.9e-296 1022.3 726 66.3
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.4e-296 1021.9 686 70.3
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 4.2e-296 1021.1 731 67.2
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.1e-296 1020.4 726 66.4
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.7e-295 1018.5 729 65.8
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 7.9e-295 1016.9 726 67.2
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 2.3e-294 1015.4 731 66.3
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 5.1e-294 1014.2 732 66.4
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 5.1e-294 1014.2 731 66.2
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.1e-293 1013.1 758 64.4
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 7.6e-290 1000.3 744 64.8
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 2.2e-289 998.8 725 65.0
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 7.9e-287 990.3 743 63.4
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 1.0e-286 989.9 729 63.8
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 5.1e-286 987.6 729 64.1
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 6.7e-286 987.3 765 62.5
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.5e-285 985.3 629 77.1
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 2.1e-284 982.2 725 63.4
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 7.6e-282 973.8 731 63.2
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 2.9e-281 971.8 726 62.4
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 5.5e-280 967.6 726 62.3
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.6e-279 966.1 726 63.4
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 2.8e-276 955.3 728 61.4
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 3.7e-276 954.9 711 63.3
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 3.7e-276 954.9 725 62.3
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.1e-275 953.4 727 62.2
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 9.0e-275 950.3 728 62.2
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.9e-273 945.3 727 62.4
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 6.5e-273 944.1 726 61.8
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.1e-272 943.3 728 61.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.9e-272 942.6 738 60.6
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 5.5e-272 941.0 729 62.6
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.8e-270 936.0 727 61.3
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 3.9e-270 934.9 729 61.7
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.9e-269 932.6 725 62.2
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.6e-268 929.5 731 61.4
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.6e-268 929.5 734 62.5
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 4.8e-268 927.9 641 70.2
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 2.4e-267 925.6 760 59.6
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 7.7e-266 920.6 732 61.1
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 4.1e-259 898.3 727 59.4
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 9.1e-259 897.1 788 56.3
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.0e-257 893.6 742 59.0
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.7e-257 892.9 731 60.1
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.7e-257 892.9 759 58.4
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.0e-254 883.6 682 62.3
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.3e-252 876.7 438 93.2
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.6e-245 852.4 738 58.1
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 7.5e-229 797.7 743 53.3
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.8e-219 766.5 749 50.5
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 4.6e-218 761.9 524 68.5
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.3e-217 760.4 725 53.1
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.0e-217 759.2 664 59.5
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 3.9e-217 758.8 733 49.5
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 2.7e-210 736.1 746 49.6
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.3e-209 733.8 731 51.6
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.4e-203 713.8 469 70.4
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 9.9e-197 691.0 475 70.9
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.1e-184 651.0 730 47.8
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.8e-183 646.4 432 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 4.9e-180 635.6 628 50.5
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.4e-174 617.5 666 49.7
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 5.3e-174 615.5 430 67.0
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.8e-158 563.9 466 60.1
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.3e-156 557.8 828 38.9
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 3.4e-149 533.1 576 50.2
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.5e-147 526.9 457 56.2
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.5e-147 526.9 404 62.6
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 6.7e-129 465.7 290 80.7
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 3.7e-127 459.9 321 66.0
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.6e-120 437.2 271 74.5
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 9.5e-107 392.1 286 66.8
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.2e-95 354.4 652 35.9
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.4e-94 350.9 242 67.4
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 2.7e-93 347.4 280 59.6
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 7.3e-83 312.8 527 35.3
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.9e-78 298.1 259 59.1
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.7e-77 294.3 256 57.0
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.9e-73 279.6 279 52.0
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 9.6e-67 259.2 202 60.4
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 3.5e-61 240.7 776 28.2
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 6.0e-53 213.4 140 70.0
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-52 212.2 172 57.6
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.0e-47 196.1 100 84.0
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 2.0e-40 171.8 84 91.7
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 5.0e-39 167.2 100 74.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 7.2e-38 163.3 193 45.1
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.0e-36 159.5 88 85.2
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.8e-36 158.7 82 90.2
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 2.3e-28 131.7 154 45.5
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 5.5e-22 110.5 78 66.7
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.8e-20 105.5 84 59.5
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 8.8e-20 103.2 95 55.8
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.0e-15 89.7 59 66.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.2e-13 82.8 45 80.0
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.7e-13 81.6 88 50.0
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 4.7e-13 80.9 39 87.2
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 6.1e-13 80.5 84 47.6
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.8e-12 79.0 56 60.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.3e-12 78.6 55 61.8
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 5.7e-11 73.9 49 71.4
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 5.9e-08 63.9 59 49.2


User provided reference genes

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