Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.1e-255 885.2 452 100.0
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.6e-250 869.0 452 98.0
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 1.5e-240 835.9 453 94.3
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.1e-238 829.7 452 94.9
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 3.8e-236 821.2 452 93.4
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 4.4e-208 728.0 453 83.0
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.9e-163 579.7 459 70.4
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 2.9e-159 565.8 460 69.6
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 4.5e-152 542.0 592 54.1
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 4.0e-108 396.0 464 51.7
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.2e-104 384.4 453 50.1
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.2e-104 384.4 466 49.4
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 7.7e-104 381.7 458 51.3
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 5.0e-103 379.0 472 47.2
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.4e-100 370.9 452 49.1
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 6.8e-100 368.6 455 47.7
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 4.8e-98 362.5 458 48.7
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 6.3e-98 362.1 459 49.2
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 8.3e-98 361.7 453 49.2
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 4.1e-97 359.4 471 46.7
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.6e-96 357.5 455 48.6
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 4.5e-96 355.9 438 50.0
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 4.5e-96 355.9 453 48.3
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 8.6e-95 351.7 453 47.9
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.5e-94 350.9 452 47.3
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 1.5e-94 350.9 456 48.5
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 1.5e-94 350.9 452 46.5
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.2e-93 347.8 457 47.0
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.2e-93 347.8 452 46.9
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 3.6e-93 346.3 453 46.6
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 6.1e-93 345.5 452 46.0
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 8.0e-93 345.1 462 45.7
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.4e-92 344.4 457 46.8
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.4e-92 344.4 455 46.4
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.2e-91 341.3 452 46.5
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.5e-91 340.9 454 46.9
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 3.4e-91 339.7 435 48.3
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.7e-90 337.4 457 47.0
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 2.2e-90 337.0 503 43.1
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 3.1e-89 333.2 455 45.3
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.1e-89 332.8 452 45.8
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.1e-89 332.8 452 45.8
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 9.2e-89 331.6 464 46.3
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 6.6e-87 325.5 474 45.1
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 8.6e-87 325.1 448 45.5
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 1.1e-86 324.7 495 44.8
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.1e-86 324.7 449 46.1
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 2.5e-86 323.6 443 45.8
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 8.0e-85 318.5 443 45.1
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.3e-84 317.0 468 42.5
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 3.1e-84 316.6 555 41.3
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 5.2e-84 315.8 462 42.0
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 6.8e-84 315.5 451 43.0
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.5e-83 314.3 451 44.3
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 2.6e-83 313.5 617 37.3
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 3.4e-83 313.2 461 44.7
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 3.4e-83 313.2 593 39.6
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 1.7e-82 310.8 534 40.3
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 2.9e-82 310.1 543 38.3
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 3.7e-82 309.7 441 45.6
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.9e-82 309.3 459 43.1
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 4.9e-82 309.3 460 44.1
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 8.3e-82 308.5 442 43.4
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 8.3e-82 308.5 452 43.4
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.4e-81 307.0 466 43.3
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 4.1e-81 306.2 746 33.4
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.4e-81 305.8 452 44.0
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 5.4e-81 305.8 523 40.9
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.2e-80 304.7 439 45.6
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.5e-80 303.1 476 41.8
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.5e-78 297.0 440 44.3
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 4.3e-78 296.2 451 43.5
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.6e-77 294.3 441 44.9
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 3.6e-77 293.1 437 44.4
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.7e-77 292.7 424 43.9
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.1e-76 291.6 512 39.3
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.4e-76 291.2 469 42.2
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 3.1e-76 290.0 427 42.4
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 4.0e-76 289.7 523 39.6
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 5.2e-76 289.3 551 37.4
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 7.5e-75 285.4 443 44.9
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.7e-74 284.3 435 43.4
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.7e-74 284.3 435 43.4
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 2.9e-74 283.5 579 36.6
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 1.1e-73 281.6 438 42.9
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.4e-73 281.2 494 39.5
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.9e-73 280.8 453 40.8
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 7.0e-73 278.9 440 43.0
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.0e-72 275.8 453 40.0
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 3.9e-71 273.1 582 37.6
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 5.6e-70 269.2 482 41.3
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 1.2e-69 268.1 441 38.8
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 2.1e-69 267.3 543 36.1
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 2.3e-68 263.8 474 40.3
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 4.0e-68 263.1 543 35.7
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 1.4e-65 254.6 452 39.2
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 2.1e-61 240.7 636 30.8
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 1.2e-59 235.0 506 34.0
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.6e-54 216.1 210 56.2
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 4.9e-50 203.0 295 45.4
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 2.4e-49 200.7 495 33.9
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 2.0e-43 181.0 406 36.0
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 7.6e-43 179.1 139 67.6
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.4e-42 176.0 436 31.4
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.7e-40 170.6 436 31.0
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.0e-40 169.5 104 75.0
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 3.9e-39 166.8 241 46.1
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.5e-38 164.1 112 71.4
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 3.3e-38 163.7 577 27.2
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 5.8e-35 152.9 461 29.7
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.3e-34 151.8 110 70.9
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.7e-34 151.4 438 28.3
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 3.0e-31 140.6 117 59.0
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.1e-28 132.1 77 79.2
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-28 130.6 145 53.1
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.2e-26 124.4 98 60.2
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 5.5e-25 119.8 100 60.0
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 6.1e-24 116.3 357 30.3
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 4.3e-22 110.2 96 58.3
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.8e-20 104.8 103 51.5
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 2.6e-19 100.9 80 62.5
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.1e-12 79.0 59 66.1
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.4e-12 77.8 109 45.9
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.5e-11 75.1 78 48.7
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 7.7e-11 72.8 48 70.8
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 5.0e-10 70.1 49 63.3
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 1.2e-08 65.5 56 64.3
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 2.1e-08 64.7 76 43.4
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 3.6e-08 63.9 104 40.4
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.6e-08 63.9 60 50.0
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 6.7e-07 59.7 64 53.1
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.1e-06 58.9 98 37.8
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 3.3e-06 57.4 98 36.7
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 9.7e-06 55.8 78 41.0


User provided reference genes

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