Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g014070.1 Solanum lycopersicum HOM05D003753 ORTHO05D020828 5.6e-62 240.7 119 100.0
Solyc05g025630.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 4.6e-56 221.1 109 96.3
Sopen05g009070 Solanum pennellii HOM05D003753 ORTHO05D020828 1.6e-45 186.0 90 98.9
Sopen05g020340 Solanum pennellii HOM05D003753 ORTHO05D020828 2.1e-45 185.7 90 97.8
Sopen00g013120 Solanum pennellii HOM05D003753 ORTHO05D020828 3.8e-42 174.9 99 86.9
Solyc05g018780.1 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.8e-37 158.7 90 85.6
Nitab4.5_0005634g0050 Nicotiana tabacum HOM05D003753 ORTHO05D005081 2.2e-34 149.1 96 76.0
Nitab4.5_0011030g0020 Nicotiana tabacum HOM05D003753 ORTHO05D005081 2.2e-34 149.1 96 76.0
PGSC0003DMG400013154 Solanum tuberosum HOM05D003753 ORTHO05D005081 3.8e-34 148.3 95 76.8
Dinv42315 Davidia involucrata HOM05D003753 ORTHO05D005081 8.4e-34 147.1 98 73.5
Solyc07g039200.4 Solanum lycopersicum HOM05D003753 ORTHO05D005081 1.1e-33 146.7 95 75.8
Sopen07g017550 Solanum pennellii HOM05D003753 ORTHO05D005081 1.1e-33 146.7 95 75.8
SGA_v2.0_scaffold75G25039 Striga asiatica HOM05D003753 ORTHO05D005081 2.5e-33 145.6 97 72.2
CAN.G732.16 Capsicum annuum HOM05D003753 ORTHO05D005081 4.2e-33 144.8 98 73.5
Migut.J00089 Erythranthe guttata HOM05D003753 ORTHO05D005081 4.2e-33 144.8 97 72.2
CANSAT56G3520 Cannabis sativa HOM05D003753 ORTHO05D005081 9.3e-33 143.7 96 70.8
Actinidia25255 Actinidia chinensis HOM05D003753 ORTHO05D005081 2.7e-32 142.1 95 71.6
Dinv36761 Davidia involucrata HOM05D003753 ORTHO05D005081 2.7e-32 142.1 98 71.4
Nn8g38881 Nelumbo nucifera HOM05D003753 ORTHO05D005081 2.7e-32 142.1 96 68.8
Oeu018239.1 Olea europaea HOM05D003753 ORTHO05D005081 4.6e-32 141.4 97 71.1
GSVIVG01015210001 Vitis vinifera HOM05D003753 ORTHO05D005081 4.6e-32 141.4 95 70.5
Cc06_g11340 Coffea canephora HOM05D003753 ORTHO05D005081 1.0e-31 140.2 97 67.0
Cfa003094 Carpinus fangiana HOM05D003753 ORTHO05D005081 1.3e-31 139.8 97 69.1
Haze_25905 Corylus avellana HOM05D003753 ORTHO05D005081 1.8e-31 139.4 97 69.1
Prupe.7G211000 Prunus persica HOM05D003753 ORTHO05D005081 3.0e-31 138.7 97 68.0
TWI34G0041 Tripterygium wilfordii HOM05D003753 ORTHO05D005081 3.0e-31 138.7 97 66.0
Lsat_1_v5_gn_2_117981 Lactuca sativa HOM05D003753 ORTHO05D005081 3.9e-31 138.3 100 68.0
Manes.08G173100 Manihot esculenta HOM05D003753 ORTHO05D005081 3.9e-31 138.3 98 66.3
TAR626G1816 Trochodendron aralioides HOM05D003753 ORTHO05D005081 5.1e-31 137.9 97 64.9
RcHm_v2.0_Chr2g0093231 Rosa chinensis HOM05D003753 ORTHO05D005081 6.7e-31 137.5 97 66.0
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 8.7e-31 137.1 98 66.3
Ciclev10004888m.g Citrus clementina HOM05D003753 ORTHO05D005081 8.7e-31 137.1 97 67.0
ECA236G2053 Erigeron canadensis HOM05D003753 ORTHO05D005081 8.7e-31 137.1 102 64.7
QL02p062809 Quercus lobata HOM05D003753 ORTHO05D005081 8.7e-31 137.1 98 66.3
PGR102G2098 Punica granatum HOM05D003753 ORTHO05D005081 1.1e-30 136.7 97 71.1
PSO210G0422 Papaver somniferum HOM05D003753 ORTHO05D005081 1.5e-30 136.3 94 66.0
TAR624G1221 Trochodendron aralioides HOM05D003753 ORTHO05D005081 1.5e-30 136.3 98 64.3
FAN23G2028 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.9e-30 136.0 95 67.4
FAN28G1000 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.9e-30 136.0 104 64.4
PSO210G4643 Papaver somniferum HOM05D003753 ORTHO05D005081 1.9e-30 136.0 94 67.0
vmacro06286 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 1.9e-30 136.0 98 66.3
FvH4_1g07300 Fragaria vesca HOM05D003753 ORTHO05D005081 2.5e-30 135.6 95 67.4
FAN19G2460 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.5e-30 135.6 95 67.4
FAN26G1206 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.5e-30 135.6 95 67.4
FAN26G3279 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.5e-30 135.6 95 67.4
MBI06_g13419_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 2.5e-30 135.6 93 69.9
DCAR_011977 Daucus carota HOM05D003753 ORTHO05D005081 4.3e-30 134.8 98 67.3
Sed0009681 Sechium edule HOM05D003753 ORTHO05D005081 5.7e-30 134.4 98 63.3
MSTRG.18971 Avicennia marina HOM05D003753 ORTHO05D005081 9.6e-30 133.7 66 84.8
Potri.007G094000 Populus trichocarpa HOM05D003753 ORTHO05D005081 9.6e-30 133.7 95 64.2
MD15G1206400 Malus domestica HOM05D003753 ORTHO05D005081 1.3e-29 133.3 97 63.9
Cpa.g.sc83.92 Carica papaya HOM05D003753 ORTHO05D005081 1.6e-29 132.9 98 63.3
Atru.chr7.1581 Acer truncatum HOM05D003753 ORTHO05D005081 2.1e-29 132.5 99 62.6
Sed0008570 Sechium edule HOM05D003753 ORTHO05D005081 2.1e-29 132.5 97 67.0
Sc18g0002060 Simmondsia chinensis HOM05D003753 ORTHO05D005081 2.1e-29 132.5 101 61.4
CDE08G0675 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 4.8e-29 131.3 94 64.9
PSO541G3309 Papaver somniferum HOM05D003753 ORTHO05D005081 4.8e-29 131.3 94 66.0
VMungo0251G1718 Vigna mungo HOM05D003753 ORTHO05D005081 4.8e-29 131.3 97 64.9
Phvul.008G006800 Phaseolus vulgaris HOM05D003753 ORTHO05D005081 6.2e-29 131.0 95 64.2
Rhsim03G0233000 Rhododendron simsii HOM05D003753 ORTHO05D005081 6.2e-29 131.0 98 63.3
ClCG03G015660 Citrullus lanatus HOM05D003753 ORTHO05D005081 8.2e-29 130.6 97 66.0
Glyma.08G104700 Glycine max HOM05D003753 ORTHO05D005081 8.2e-29 130.6 84 66.7
HanXRQChr06g0178531 Helianthus annuus HOM05D003753 ORTHO05D005081 1.4e-28 129.8 99 62.6
Glyma.05G147800 Glycine max HOM05D003753 ORTHO05D005081 2.4e-28 129.0 89 66.3
Hund06681 Selenicereus undatus HOM05D003753 ORTHO05D005081 2.4e-28 129.0 98 62.2
HanXRQChr11g0321581 Helianthus annuus HOM05D003753 ORTHO05D005081 3.1e-28 128.6 99 61.6
MBI06_g38945_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D020828 3.1e-28 128.6 93 64.5
Aqoxy7G01225 Aquilegia oxysepala HOM05D003753 ORTHO05D005081 4.1e-28 128.3 99 59.6
Gohir.D07G010900 Gossypium hirsutum HOM05D003753 ORTHO05D005081 4.1e-28 128.3 98 62.2
Gorai.001G011300 Gossypium raimondii HOM05D003753 ORTHO05D005081 4.1e-28 128.3 98 62.2
Peaxi162Scf00083g00426 Petunia axillaris HOM05D003753 ORTHO05D005081 4.1e-28 128.3 89 70.8
CDE06G0756 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 5.3e-28 127.9 94 63.8
COL.COLO4_18208 Corchorus olitorius HOM05D003753 ORTHO05D005081 5.3e-28 127.9 98 62.2
Lalb_Chr07g0187091 Lupinus albus HOM05D003753 ORTHO05D005081 5.3e-28 127.9 96 64.6
A09p12430 Brassica napus HOM05D003753 ORTHO05D005081 6.9e-28 127.5 94 67.0
BraA09t36888Z Brassica rapa HOM05D003753 ORTHO05D005081 6.9e-28 127.5 94 67.0
Lsat_1_v5_gn_8_87641 Lactuca sativa HOM05D003753 ORTHO05D005081 6.9e-28 127.5 69 76.8
arahy.Tifrunner.gnm1.ann1.D26Z0K Arachis hypogaea HOM05D003753 ORTHO05D005081 1.2e-27 126.7 96 64.6
arahy.Tifrunner.gnm1.ann1.JW8PS1 Arachis hypogaea HOM05D003753 ORTHO05D005081 1.2e-27 126.7 96 64.6
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 1.2e-27 126.7 64 82.8
BcaC04g22845 Brassica carinata HOM05D003753 ORTHO05D005081 1.5e-27 126.3 95 63.2
C09p14710 Brassica napus HOM05D003753 ORTHO05D005081 1.5e-27 126.3 95 63.2
BolC9t54374H Brassica oleracea HOM05D003753 ORTHO05D005081 1.5e-27 126.3 95 63.2
CiPaw.08G138800 Carya illinoinensis HOM05D003753 ORTHO05D005081 1.5e-27 126.3 97 61.9
Duzib150G1398 Durio zibethinus HOM05D003753 ORTHO05D005081 2.0e-27 125.9 98 62.2
Duzib187G1746 Durio zibethinus HOM05D003753 ORTHO05D005081 2.0e-27 125.9 98 62.2
SalBow6G3352 Salvia bowleyana HOM05D003753 ORTHO05D020828 2.0e-27 125.9 103 58.3
EL10Ac8g19226 Beta vulgaris HOM05D003753 ORTHO05D005081 2.6e-27 125.6 98 58.2
Ciclev10010770m.g Citrus clementina HOM05D003753 ORTHO05D005081 3.4e-27 125.2 92 62.0
BcaB08g34872 Brassica carinata HOM05D003753 ORTHO05D005081 5.8e-27 124.4 94 63.8
Gohir.A07G010600 Gossypium hirsutum HOM05D003753 ORTHO05D005081 5.8e-27 124.4 98 60.2
Sabra05G0061300 Salix brachista HOM05D003753 ORTHO05D005081 7.6e-27 124.0 90 63.3
Thecc.09G090200 Theobroma cacao HOM05D003753 ORTHO05D005081 7.6e-27 124.0 98 61.2
Sp3g32920 Schrenkiella parvula HOM05D003753 ORTHO05D005081 1.0e-26 123.6 87 63.2
A09p59260 Brassica napus HOM05D003753 ORTHO05D005081 1.7e-26 122.9 94 63.8
BraA09t41308Z Brassica rapa HOM05D003753 ORTHO05D005081 1.7e-26 122.9 94 63.8
Sabra07G0077800 Salix brachista HOM05D003753 ORTHO05D005081 1.7e-26 122.9 95 60.0
vmacro23429 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 1.7e-26 122.9 63 77.8
Carub.0003s3383 Capsella rubella HOM05D003753 ORTHO05D005081 2.9e-26 122.1 94 61.7
CsaV3_1G040350 Cucumis sativus L. HOM05D003753 ORTHO05D005081 2.9e-26 122.1 97 61.9
Lj4g0022105 Lotus japonicus HOM05D003753 ORTHO05D005081 2.9e-26 122.1 98 60.2
MELO3C015462.2 Cucumis melo HOM05D003753 ORTHO05D005081 3.8e-26 121.7 97 60.8
Eucgr.C03892 Eucalyptus grandis HOM05D003753 ORTHO05D005081 3.8e-26 121.7 64 78.1
HPP92_012451 Vanilla planifolia HOM05D003753 ORTHO05D005081 3.8e-26 121.7 94 64.9
Ah.13g077350 Amaranthus hybridus HOM05D003753 ORTHO05D005081 5.0e-26 121.3 101 56.4
Lj4g0004391 Lotus japonicus HOM05D003753 ORTHO05D005081 5.0e-26 121.3 66 75.8
Psat7g005120 Pisum sativum HOM05D003753 ORTHO05D005081 5.0e-26 121.3 66 77.3
FAN02G0879 Fragaria x ananassa HOM05D003753 ORTHO05D005081 6.5e-26 120.9 78 67.9
CiPaw.08G159100 Carya illinoinensis HOM05D003753 ORTHO05D005081 8.4e-26 120.6 96 59.4
Medtr8g080700 Medicago truncatula HOM05D003753 ORTHO05D005081 1.4e-25 119.8 66 74.2
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.9e-25 119.4 109 57.8
Aa31LG8G16560 Aethionema arabicum HOM05D003753 ORTHO05D005081 1.9e-25 119.4 95 61.1
AT2G19540 Arabidopsis thaliana HOM05D003753 ORTHO05D005081 1.9e-25 119.4 84 63.1
Ca_18022_v3 Cicer arietinum L. HOM05D003753 ORTHO05D005081 3.2e-25 118.6 66 74.2
CARHR109970 Cardamine hirsuta HOM05D003753 ORTHO05D005081 4.2e-25 118.2 90 60.0
SEGI_14219 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 4.2e-25 118.2 95 62.1
Medtr5g024090 Medicago truncatula HOM05D003753 ORTHO05D005081 7.2e-25 117.5 90 56.7
Thhalv10022672m.g Eutrema salsugineum HOM05D003753 ORTHO05D005081 9.3e-25 117.1 87 59.8
unitig_699.g19554 Utricularia gibba HOM05D003753 ORTHO05D005081 2.1e-24 115.9 63 74.6
TPR.G17083 Trifolium pratense HOM05D003753 ORTHO05D005081 2.7e-24 115.5 63 76.2
SEGI_09916 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 3.5e-24 115.2 90 57.8
SEGI_28493 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 3.5e-24 115.2 90 57.8
BcaC07g41247 Brassica carinata HOM05D003753 ORTHO05D005081 4.6e-24 114.8 95 56.8
C08p42530 Brassica napus HOM05D003753 ORTHO05D005081 4.6e-24 114.8 95 56.8
BolC8t51814H Brassica oleracea HOM05D003753 ORTHO05D005081 4.6e-24 114.8 95 56.8
FAN23G0946 Fragaria x ananassa HOM05D003753 ORTHO05D005081 4.6e-24 114.8 78 64.1
THA.LOC104814615 Tarenaya hassleriana HOM05D003753 ORTHO05D005081 4.6e-24 114.8 64 70.3
Potri.005G074400 Populus trichocarpa HOM05D003753 ORTHO05D005081 6.1e-24 114.4 95 56.8
AagrBONN_evm.TU.Sc2ySwM_344.2490 Anthoceros agrestis HOM05D003753 ORTHO05D005081 1.8e-23 112.8 111 47.7
AUR62033985 Chenopodium quinoa HOM05D003753 ORTHO05D005081 3.0e-23 112.1 94 55.3
AUR62027495 Chenopodium quinoa HOM05D003753 ORTHO05D005081 6.7e-23 110.9 95 53.7
CSS0046684 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 1.5e-22 109.8 95 60.0
Os11g0134500 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 2.5e-22 109.0 87 60.9
ATR0807G172 Amborella trichopoda HOM05D003753 ORTHO05D005081 7.4e-22 107.5 109 47.7
BraA07t27911Z Brassica rapa HOM05D003753 ORTHO05D005081 8.2e-21 104.0 78 62.8
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 1.1e-20 103.6 79 55.7
Zm00001eb163470 Zea mays HOM05D003753 ORTHO05D005081 1.1e-20 103.6 87 57.5
Mapoly0090s0067 Marchantia polymorpha HOM05D003753 ORTHO05D005081 9.0e-20 100.5 64 60.9
SMO270G0139 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 2.0e-19 99.4 81 53.1
Zm00001eb354080 Zea mays HOM05D003753 ORTHO05D005081 2.0e-19 99.4 64 67.2
Pp3c12_16950 Physcomitrium patens HOM05D003753 ORTHO05D005081 1.7e-18 96.3 109 45.9
Cre17.g724850 Chlamydomonas reinhardtii HOM05D003753 ORTHO05D005081 2.1e-16 89.4 86 43.0
Lj7A675T45 Lonicera japonica HOM05D003753 ORTHO05D020828 2.1e-16 89.4 71 62.0
Lalb_Chr13g0294391 Lupinus albus HOM05D003753 ORTHO05D005081 1.4e-15 86.7 78 61.5
MCO09G725 Micromonas commoda HOM05D003753 ORTHO05D005081 1.1e-14 83.6 78 44.9
SGA_v2.0_scaffold85G26676 Striga asiatica HOM05D000860 ORTHO05D003230 9.1e-12 73.9 59 64.4
PRCOL_00005408 Prasinoderma coloniale HOM05D003753 ORTHO05D005081 5.9e-11 71.2 87 42.5
CBR_g58801 Chara braunii HOM05D003753 ORTHO05D005081 1.7e-10 69.7 64 51.6
MD02G1077800 Malus domestica HOM05D003753 ORTHO05D005081 2.2e-10 69.3 117 39.3
Cfa024003 Carpinus fangiana HOM05D003753 ORTHO05D123424 7.2e-09 64.3 65 47.7
A07p01230 Brassica napus HOM05D003753 ORTHO05D005081 1.8e-07 59.7 31 74.2
BcaB03g16742 Brassica carinata HOM05D003753 ORTHO05D005081 3.3e-06 55.5 83 41.0


User provided reference genes

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