Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 0.0e+00 1124.8 820 100.0
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 1.7e-271 939.5 1048 73.6
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 7.9e-240 834.3 1058 67.5
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 8.5e-202 708.0 1036 63.2
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 6.1e-184 648.7 1034 61.2
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.6e-163 580.9 1040 57.8
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.3e-162 577.8 676 80.0
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 3.2e-92 344.0 1073 42.0
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 9.7e-89 332.4 1052 40.9
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 7.7e-86 322.8 1060 41.0
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 6.5e-85 319.7 682 55.1
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 1.5e-81 308.5 671 54.1
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 2.0e-81 308.1 1064 41.6
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 2.6e-81 307.8 673 54.1
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 6.3e-80 303.1 338 50.6
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 6.3e-80 303.1 672 53.1
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 1.4e-79 302.0 1053 41.8
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 3.1e-79 300.8 1058 41.2
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 5.4e-79 300.1 1058 42.2
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 2.7e-78 297.7 719 29.9
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 2.3e-77 294.7 1057 43.6
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 3.6e-75 287.3 1057 40.9
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 6.1e-75 286.6 1045 40.1
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 6.1e-75 286.6 1054 38.5
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 8.0e-75 286.2 1054 38.5
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 2.0e-73 281.6 666 51.5
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 2.6e-73 281.2 1063 38.5
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 2.6e-73 281.2 1050 29.0
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 5.7e-73 280.0 661 52.0
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 2.8e-72 277.7 677 51.4
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 3.7e-72 277.3 660 54.1
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 6.3e-72 276.6 668 54.6
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 1.1e-71 275.8 671 52.5
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 3.1e-71 274.2 670 55.1
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 4.1e-71 273.9 685 28.3
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 5.4e-71 273.5 673 52.7
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 1.2e-70 272.3 675 47.9
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 2.7e-70 271.2 720 28.5
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 1.3e-69 268.9 1053 38.8
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.9e-69 267.3 1053 38.7
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 6.6e-69 266.5 672 50.7
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 6.6e-69 266.5 674 50.9
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 3.3e-68 264.2 584 53.1
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 4.3e-68 263.8 679 50.5
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 7.3e-68 263.1 671 52.3
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 2.1e-67 261.5 679 51.0
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 4.7e-67 260.4 663 45.7
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.8e-66 258.5 720 27.2
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 3.1e-66 257.7 654 51.4
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 1.5e-65 255.4 583 54.5
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 2.6e-65 254.6 352 39.8
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 2.6e-65 254.6 338 40.8
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 4.4e-65 253.8 336 39.6
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 1.3e-64 252.3 655 52.1
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 4.9e-64 250.4 1067 40.4
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 8.3e-64 249.6 1044 28.6
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.9e-63 248.4 675 50.5
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 1.6e-59 235.3 858 40.3
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 2.1e-59 235.0 337 39.5
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 4.9e-56 223.8 371 33.7
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 7.0e-55 219.9 1069 38.4
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 3.5e-54 217.6 360 33.6
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 2.5e-52 211.5 1072 38.1
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 3.6e-51 207.6 734 27.0
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 6.8e-50 203.4 310 36.1
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 5.8e-49 200.3 212 52.8
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 7.5e-49 199.9 335 31.9
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 9.9e-49 199.5 1039 38.9
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 8.3e-48 196.4 311 34.1
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 6.6e-45 186.8 718 24.1
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 4.2e-39 167.5 261 37.5
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 6.0e-38 163.7 701 50.4
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 7.8e-38 163.3 259 35.5
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 5.6e-36 157.1 658 45.7
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.2e-33 149.4 230 35.2
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 2.0e-33 148.7 230 36.1
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 2.0e-33 148.7 230 36.1
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.9e-32 144.8 336 28.0
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 8.4e-32 143.3 333 28.2
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 2.1e-30 138.7 336 26.5
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 3.5e-30 137.9 336 28.6
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 8.7e-29 133.3 333 26.1
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 4.3e-28 131.0 651 46.5
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 1.6e-27 129.0 990 36.5
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 4.8e-27 127.5 336 27.1
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 2.9e-24 118.2 483 61.3
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 3.0e-21 108.2 147 37.4
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 3.1e-18 98.2 247 26.7
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 2.6e-17 95.1 175 32.0
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 2.2e-16 92.0 231 27.3
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 2.2e-16 92.0 231 26.0
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 2.9e-16 91.7 155 38.1
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 8.4e-16 90.1 135 40.0
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 2.1e-14 85.5 231 26.8
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 2.7e-14 85.1 441 60.3
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 4.6e-14 84.3 133 40.6
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 6.0e-14 84.0 133 39.1
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 7.9e-14 83.6 133 38.3
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 7.9e-14 83.6 312 24.7
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 3.9e-13 81.3 144 32.6
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 3.3e-12 78.2 141 32.6
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.5e-09 69.3 125 36.8
QL03p000909 Quercus lobata HOM05D005622 ORTHO05D002854 3.4e-09 68.2 367 23.2
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 4.5e-09 67.8 343 21.6
QL03p001266 Quercus lobata HOM05D005622 ORTHO05D002854 1.3e-08 66.2 367 23.2
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 2.2e-08 65.5 305 20.7
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 3.8e-08 64.7 251 21.9
Thecc.02G332900 Theobroma cacao HOM05D005622 ORTHO05D002854 5.0e-08 64.3 351 23.1
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 5.0e-08 64.3 200 27.0
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 6.5e-08 63.9 73 39.7
PSO210G0128 Papaver somniferum HOM05D000001 ORTHO05D000003 6.5e-08 63.9 188 23.9
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 8.4e-08 63.5 193 22.3
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 1.1e-07 63.2 343 21.3
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 1.9e-07 62.4 327 20.5
TWI34G2010 Tripterygium wilfordii HOM05D007251 ORTHO05D009266 1.9e-07 62.4 282 23.8
MD15G1399900 Malus domestica HOM05D006694 ORTHO05D034883 2.5e-07 62.0 170 24.1
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 3.2e-07 61.6 195 20.5
CARHR074340 Cardamine hirsuta HOM05D000891 ORTHO05D000761 3.2e-07 61.6 211 24.6
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 3.2e-07 61.6 310 24.5
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 3.2e-07 61.6 194 22.2
Atru.chr11.1653 Acer truncatum HOM05D005622 ORTHO05D002854 4.2e-07 61.2 202 25.7
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 4.2e-07 61.2 160 27.5
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 4.2e-07 61.2 195 21.0
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 4.2e-07 61.2 181 22.1
Rhsim10G0193900 Rhododendron simsii HOM05D006556 ORTHO05D008146 5.5e-07 60.8 250 22.8
CiPaw.13G042800 Carya illinoinensis HOM05D005622 ORTHO05D002854 7.1e-07 60.5 324 21.9
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 7.1e-07 60.5 195 20.5
HanXRQChr14g0435491 Helianthus annuus HOM05D000162 ORTHO05D000090 7.1e-07 60.5 111 34.2
Solyc02g065030.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.1e-07 60.5 259 20.8
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 9.3e-07 60.1 195 21.0
Eucgr.J01726 Eucalyptus grandis HOM05D005973 ORTHO05D007285 9.3e-07 60.1 161 32.9
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 9.3e-07 60.1 285 26.3
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 9.3e-07 60.1 178 28.1
Aa31LG7G8600 Aethionema arabicum HOM05D005622 ORTHO05D002854 1.2e-06 59.7 326 22.4
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 1.2e-06 59.7 195 20.5
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 1.2e-06 59.7 304 23.7
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 1.2e-06 59.7 177 27.1
Sabra16G0092400 Salix brachista HOM05D005622 ORTHO05D002854 1.2e-06 59.7 323 21.1
Zm00001eb193870 Zea mays HOM05D000181 ORTHO05D000003 1.2e-06 59.7 232 24.1
AagrBONN_evm.TU.Sc2ySwM_228.174 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 59.3 239 23.4
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 1.6e-06 59.3 262 21.0
Potri.016G086100 Populus trichocarpa HOM05D005622 ORTHO05D002854 1.6e-06 59.3 323 20.4
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.6e-06 59.3 330 19.7
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.6e-06 59.3 330 19.7
Sp3g26890 Schrenkiella parvula HOM05D007173 ORTHO05D009151 1.6e-06 59.3 170 28.8
Aqoxy5G01020 Aquilegia oxysepala HOM05D005622 ORTHO05D011376 2.1e-06 58.9 136 27.2
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 2.1e-06 58.9 195 20.5
CAN.G397.65 Capsicum annuum HOM05D000001 ORTHO05D000003 2.1e-06 58.9 306 21.2
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 2.1e-06 58.9 212 23.6
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.1e-06 58.9 360 23.3
Gohir.A09G173100 Gossypium hirsutum HOM05D005622 ORTHO05D002854 2.1e-06 58.9 326 22.1
Gohir.D09G168800 Gossypium hirsutum HOM05D005622 ORTHO05D002854 2.1e-06 58.9 205 24.4
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 2.1e-06 58.9 255 20.4
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 2.1e-06 58.9 255 22.4
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 2.1e-06 58.9 195 21.5
TWI79G0708 Tripterygium wilfordii HOM05D005622 ORTHO05D002854 2.1e-06 58.9 327 22.9
Duzib248G0892 Durio zibethinus HOM05D005622 ORTHO05D002854 2.7e-06 58.5 205 24.9
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.7e-06 58.5 193 20.7
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 2.7e-06 58.5 117 25.6
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 2.7e-06 58.5 189 20.6
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 2.7e-06 58.5 189 20.6
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 2.7e-06 58.5 91 37.4
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 3.5e-06 58.2 139 39.6
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 3.5e-06 58.2 208 21.6
PGR031G1457 Punica granatum HOM05D005973 ORTHO05D007285 3.5e-06 58.2 203 29.1
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 3.5e-06 58.2 364 25.5
AagrBONN_evm.TU.Sc2ySwM_117.323 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 57.8 189 25.9
CARHR025470 Cardamine hirsuta HOM05D005622 ORTHO05D002854 4.6e-06 57.8 330 22.1
Thhalv10022652m.g Eutrema salsugineum HOM05D007173 ORTHO05D009151 4.6e-06 57.8 170 28.2
PSO447G0195 Papaver somniferum HOM05D000001 ORTHO05D000003 4.6e-06 57.8 188 22.9
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 4.6e-06 57.8 341 26.1
Aqoxy3G03617 Aquilegia oxysepala HOM05D005622 ORTHO05D002854 6.1e-06 57.4 205 24.9
Sc19g0006870 Simmondsia chinensis HOM05D000001 ORTHO05D000003 6.1e-06 57.4 193 24.9
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 6.1e-06 57.4 341 26.1
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 6.1e-06 57.4 173 27.2
TAR629G1135 Trochodendron aralioides HOM05D005622 ORTHO05D002854 6.1e-06 57.4 323 22.3
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 7.9e-06 57.0 202 21.8
Ciclev10014595m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.9e-06 57.0 327 22.6
Duzib093G1875 Durio zibethinus HOM05D000855 ORTHO05D008530 7.9e-06 57.0 195 20.0
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.9e-06 57.0 154 28.6
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 7.9e-06 57.0 195 19.5
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 7.9e-06 57.0 195 19.5
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 7.9e-06 57.0 140 30.7
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 7.9e-06 57.0 201 20.9
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 7.9e-06 57.0 219 21.0


User provided reference genes

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