Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 0.0e+00 1139.0 573 100.0
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 0.0e+00 1105.9 561 98.9
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 0.0e+00 1080.1 558 96.4
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 2.2e-260 902.1 554 82.3
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 3.0e-246 855.1 474 89.7
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 2.3e-201 706.1 569 67.1
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 1.3e-180 637.1 567 59.8
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 3.1e-174 615.9 535 60.0
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 1.2e-173 614.0 533 59.8
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 1.5e-173 613.6 546 60.3
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 9.9e-173 610.9 539 60.3
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 1.3e-172 610.5 555 57.7
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 4.9e-172 608.6 562 57.1
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 4.2e-171 605.5 566 56.7
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 9.3e-171 604.4 557 57.6
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 1.6e-170 603.6 563 57.9
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 1.8e-169 600.1 540 58.3
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 2.5e-168 596.3 553 58.2
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 3.3e-168 595.9 612 54.6
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 1.3e-167 594.0 554 58.3
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 3.7e-167 592.4 557 57.1
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 4.0e-166 589.0 542 57.6
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 5.3e-166 588.6 537 57.4
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 2.0e-165 586.6 541 56.6
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 4.5e-165 585.5 621 53.8
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 5.8e-165 585.1 566 55.8
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 1.9e-163 580.1 546 56.6
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 7.1e-163 578.2 526 55.9
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 1.2e-162 577.4 563 55.4
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 2.1e-162 576.6 574 55.1
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 3.5e-162 575.9 547 56.7
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 4.3e-160 568.9 547 55.9
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 9.6e-160 567.8 579 53.7
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 9.6e-160 567.8 538 55.8
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 1.6e-159 567.0 540 54.8
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 2.1e-159 566.6 540 56.1
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 2.8e-159 566.2 545 54.5
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 2.4e-158 563.1 566 54.4
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 9.0e-158 561.2 526 55.7
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 1.2e-157 560.8 549 54.3
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 2.6e-157 559.7 539 54.7
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 7.6e-157 558.1 522 57.5
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 1.0e-156 557.8 531 55.9
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 4.9e-156 555.4 544 55.7
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 8.4e-156 554.7 543 54.3
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 1.1e-155 554.3 542 55.9
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 3.2e-155 552.7 535 55.1
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 4.2e-155 552.4 559 53.1
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 5.5e-155 552.0 526 55.5
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 2.7e-154 549.7 533 55.0
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 2.3e-153 546.6 522 56.5
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 9.7e-152 541.2 570 51.8
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 1.4e-150 537.3 465 61.3
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 1.2e-149 534.3 523 54.9
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 2.6e-149 533.1 525 55.2
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 5.0e-148 528.9 528 54.9
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 6.5e-148 528.5 540 54.6
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 4.6e-146 522.3 527 53.3
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 2.3e-145 520.0 422 62.8
THA.LOC104813767 Tarenaya hassleriana HOM05D005865 ORTHO05D006867 2.3e-145 520.0 520 54.0
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 6.7e-145 518.5 571 51.0
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 1.1e-144 517.7 536 51.9
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 1.9e-144 516.9 536 51.9
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 1.3e-143 514.2 504 56.7
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 1.7e-143 513.8 527 51.4
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 2.8e-143 513.1 539 52.1
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 3.7e-143 512.7 533 51.8
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 8.2e-143 511.5 526 51.5
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 4.1e-142 509.2 545 51.4
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 5.3e-142 508.8 531 52.5
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 1.5e-141 507.3 536 50.4
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 2.6e-141 506.5 528 51.7
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 3.4e-141 506.1 538 50.9
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 3.4e-141 506.1 528 52.1
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 3.4e-141 506.1 528 52.1
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 4.5e-141 505.8 530 50.6
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 5.9e-141 505.4 600 48.0
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 7.7e-141 505.0 530 52.1
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 1.7e-140 503.8 522 52.5
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 2.2e-140 503.4 577 50.8
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 1.0e-137 494.6 543 48.6
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 2.3e-137 493.4 543 49.7
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 1.1e-136 491.1 538 51.3
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 4.4e-136 489.2 534 49.4
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 1.7e-132 477.2 548 49.5
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 6.5e-132 475.3 441 58.0
AL1G33260 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 3.2e-131 473.0 530 49.1
Sc15g0004650 Simmondsia chinensis HOM05D005865 ORTHO05D006867 9.4e-131 471.5 385 63.4
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 4.7e-130 469.2 560 48.2
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 6.3e-127 458.8 557 46.9
MELO3C017004.2 Cucumis melo HOM05D005865 ORTHO05D006867 6.3e-127 458.8 521 51.1
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 1.4e-126 457.6 493 52.5
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 2.4e-126 456.8 496 49.4
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 1.6e-117 427.6 337 65.6
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 2.0e-117 427.2 385 56.9
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 2.5e-115 420.2 254 77.2
Pp3c20_10980 Physcomitrium patens HOM05D005865 ORTHO05D006867 3.2e-115 419.9 557 42.5
AagrBONN_evm.TU.Sc2ySwM_344.4811 Anthoceros agrestis HOM05D005865 ORTHO05D006867 1.8e-110 404.1 546 42.1
Mapoly0006s0010 Marchantia polymorpha HOM05D005865 ORTHO05D006867 2.3e-105 387.1 539 40.8
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 6.8e-105 385.6 253 70.8
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 2.8e-98 363.6 450 47.6
AUR62036767 Chenopodium quinoa HOM05D005865 ORTHO05D006867 2.1e-90 337.4 416 47.4
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 9.8e-88 328.6 211 72.5
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 3.7e-87 326.6 260 64.6
SMO364G0210 Selaginella moellendorffii HOM05D005865 ORTHO05D006867 1.5e-83 314.7 253 58.1
SEGI_14934 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 2.5e-83 313.9 243 63.4
CBR_g81579 Chara braunii HOM05D005865 ORTHO05D006867 1.1e-78 298.5 460 39.3
BcaC07g42576 Brassica carinata HOM05D005865 ORTHO05D006867 3.0e-68 263.8 246 56.9
PRCOL_00003715 Prasinoderma coloniale HOM05D005865 ORTHO05D006867 2.1e-53 214.5 503 29.2
MCO16G112 Micromonas commoda HOM05D005865 ORTHO05D006867 6.0e-53 213.0 247 43.7
Cpa.g.sc26.238 Carica papaya HOM05D005865 ORTHO05D006867 4.2e-46 190.3 187 53.5
Cpa.g.sc26.237 Carica papaya HOM05D005865 ORTHO05D006867 1.2e-45 188.7 258 45.0
A07p15690 Brassica napus HOM05D005865 ORTHO05D006867 1.1e-33 149.1 231 41.6
Oeu025004.1 Olea europaea HOM05D005865 ORTHO05D006867 1.4e-33 148.7 214 40.7
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 9.0e-33 146.0 149 51.0
FAN15G0850 Fragaria x ananassa HOM05D005865 ORTHO05D006867 5.9e-32 143.3 291 33.3
MD15G1004800 Malus domestica HOM05D005865 ORTHO05D006867 1.4e-28 132.1 106 66.0
Rhsim11G0079600 Rhododendron simsii HOM05D005865 ORTHO05D006867 2.3e-28 131.3 124 52.4
Cre12.g506900 Chlamydomonas reinhardtii HOM05D005865 ORTHO05D006867 1.0e-23 115.9 319 27.9
SHI04100 Sapria himalayana HOM05D005865 ORTHO05D006867 2.9e-23 114.4 210 35.7
Hma1.2p1_1100F.1_g257120 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 5.5e-22 110.2 227 35.2
SEGI_13350 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 6.7e-20 103.2 160 42.5
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.6e-19 101.3 137 41.6
BcaB03g14322 Brassica carinata HOM05D005865 ORTHO05D006867 1.2e-16 92.4 140 39.3
FAN20G0402 Fragaria x ananassa HOM05D005865 ORTHO05D006867 2.0e-16 91.7 170 37.1
Cpa.g.sc26.239 Carica papaya HOM05D005865 ORTHO05D006867 2.6e-16 91.3 54 77.8
MELO3C032646.2 Cucumis melo HOM05D005865 ORTHO05D006867 1.3e-15 89.0 101 44.6
MELO3C035121.2 Cucumis melo HOM05D005865 ORTHO05D000044 1.0e-12 79.3 65 60.0
EL10Ac1g02029 Beta vulgaris HOM05D056011 ORTHO05D006867 1.1e-11 75.9 66 53.0
SHI04101 Sapria himalayana HOM05D005865 ORTHO05D006867 2.6e-11 74.7 162 35.2
Lj2A91G56 Lonicera japonica HOM05D005865 ORTHO05D006867 2.0e-08 65.1 39 74.4
MELO3C031410.2 Cucumis melo HOM05D005865 ORTHO05D006867 6.5e-07 60.1 111 34.2


User provided reference genes

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