Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 4.3e-253 877.5 432 100.0
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 6.2e-252 873.6 432 99.5
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 6.6e-246 853.6 432 97.5
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 3.1e-227 791.6 433 90.5
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 2.3e-222 775.4 434 89.6
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.1e-211 738.4 407 89.2
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.3e-190 669.1 434 79.0
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.2e-168 595.1 432 67.8
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.1e-163 580.5 414 67.9
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.8e-163 579.7 393 70.7
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 3.1e-163 578.9 417 67.6
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 4.1e-163 578.6 404 68.6
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 5.9e-162 574.7 404 67.6
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.7e-161 573.2 397 69.0
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.9e-161 572.0 393 68.7
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 1.6e-159 566.6 395 69.9
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 1.6e-159 566.6 409 66.3
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 2.8e-159 565.8 397 68.3
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 3.6e-159 565.5 399 68.2
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 3.6e-159 565.5 397 68.8
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 8.0e-159 564.3 394 69.5
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 3.1e-158 562.4 416 65.6
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.1e-158 562.4 409 66.0
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 8.9e-158 560.8 396 66.7
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 4.9e-156 555.1 385 68.8
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 4.9e-156 555.1 397 68.0
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 7.8e-154 547.7 421 64.6
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.0e-153 547.4 397 67.3
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.9e-152 543.1 421 63.9
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 4.7e-151 538.5 385 64.4
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 5.2e-150 535.0 376 67.3
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 6.4e-148 528.1 394 64.2
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 1.3e-145 520.4 393 63.1
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 3.9e-145 518.8 395 64.6
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 6.6e-145 518.1 418 59.1
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.1e-144 517.3 397 64.7
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 5.6e-144 515.0 375 65.3
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.6e-144 515.0 399 62.9
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 7.3e-144 514.6 393 62.1
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 7.3e-144 514.6 432 60.4
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 7.3e-144 514.6 421 58.9
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.2e-143 513.8 393 63.4
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 4.7e-143 511.9 392 63.0
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 2.3e-142 509.6 428 59.3
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 4.0e-142 508.8 408 61.5
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.7e-140 503.4 402 63.7
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 1.4e-139 500.4 399 60.2
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 7.1e-139 498.0 400 61.8
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 1.2e-138 497.3 393 61.6
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 1.2e-138 497.3 397 61.0
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 4.6e-138 495.4 407 60.0
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.3e-137 493.0 397 61.7
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 3.3e-136 489.2 415 57.3
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 2.8e-135 486.1 362 64.4
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 5.2e-134 481.9 397 58.4
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 5.8e-133 478.4 392 58.4
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 7.6e-133 478.0 392 58.7
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 3.8e-132 475.7 404 57.9
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 6.4e-132 474.9 392 61.7
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.9e-131 473.4 396 60.1
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.1e-130 469.9 396 58.3
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.1e-130 469.9 396 58.3
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.7e-130 469.5 388 60.8
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.7e-129 466.8 391 58.1
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 3.0e-129 466.1 392 60.2
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.1e-128 464.2 371 62.5
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.6e-128 461.1 367 62.1
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 1.3e-127 460.7 396 58.6
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.6e-127 459.1 395 57.0
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.8e-126 456.8 394 56.3
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 4.0e-126 455.7 392 55.9
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 1.5e-125 453.8 415 54.9
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 2.0e-125 453.4 395 56.7
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.4e-125 452.2 411 57.9
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 7.6e-125 451.4 357 59.9
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 7.6e-125 451.4 419 53.7
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.3e-124 450.7 397 55.9
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.7e-124 450.3 400 58.8
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 8.4e-124 448.0 394 58.1
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.1e-123 447.6 394 57.9
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.2e-123 446.0 411 57.4
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.2e-122 444.1 338 63.0
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 1.0e-121 441.0 418 52.9
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.3e-121 440.7 413 56.7
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 2.3e-121 439.9 351 61.5
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 6.6e-121 438.3 392 53.8
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.9e-120 436.8 403 56.8
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 6.2e-119 431.8 392 56.9
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.0e-118 429.1 403 55.1
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 6.9e-118 428.3 394 56.9
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.7e-116 423.7 419 53.2
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.2e-116 423.3 409 51.3
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 3.2e-115 419.5 408 51.2
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 7.1e-115 418.3 386 57.0
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.2e-114 417.5 395 51.4
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 7.9e-114 414.8 410 55.4
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 5.1e-113 412.1 408 54.7
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.7e-113 411.4 408 54.4
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.3e-112 409.1 418 50.5
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.4e-112 408.3 391 52.4
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 2.8e-111 406.4 381 54.9
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 2.8e-111 406.4 385 54.5
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 4.8e-111 405.6 387 55.0
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 6.2e-111 405.2 393 53.2
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.1e-111 404.8 387 55.0
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 8.1e-111 404.8 396 54.0
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.4e-110 404.1 381 54.6
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.3e-110 402.1 402 53.7
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 5.5e-107 392.1 390 53.1
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 1.6e-106 390.6 404 49.8
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 2.7e-106 389.8 395 51.6
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.0e-105 387.9 394 50.8
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 6.7e-105 385.2 358 52.5
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 3.3e-104 382.9 395 52.2
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 4.3e-104 382.5 391 51.9
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 5.7e-104 382.1 391 51.9
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 5.7e-104 382.1 391 51.9
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 7.4e-104 381.7 415 50.6
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 9.6e-104 381.3 368 54.6
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 2.1e-103 380.2 381 51.4
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 3.7e-103 379.4 371 50.7
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 4.8e-103 379.0 391 50.9
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 6.2e-103 378.6 383 53.0
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 8.2e-103 378.3 381 50.7
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.1e-102 377.9 404 49.0
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.4e-102 377.5 393 50.1
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.1e-102 376.3 393 49.4
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 5.3e-102 375.6 390 49.0
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.1e-99 367.9 386 50.0
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 1.9e-99 367.1 390 47.7
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.2e-99 365.9 335 57.0
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 4.6e-98 362.5 311 58.2
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.3e-97 360.9 382 46.9
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 9.7e-96 354.8 418 45.0
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.3e-95 354.4 400 44.5
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 1.1e-94 351.3 421 48.0
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 6.5e-92 342.0 289 60.9
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.4e-91 340.9 380 47.1
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 6.1e-90 335.5 387 45.2
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 3.9e-89 332.8 431 40.1
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 1.3e-87 327.8 365 46.0
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 4.5e-85 319.3 388 44.8
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.4e-83 314.3 362 45.9
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.6e-82 310.8 278 57.9
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 2.3e-81 307.0 374 43.6
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 3.3e-80 303.1 361 45.4
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 5.3e-78 295.8 431 40.1
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 5.2e-73 279.3 300 49.3
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 8.8e-73 278.5 380 41.3
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.3e-71 274.6 377 39.8
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.8e-63 246.1 293 48.8
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 2.4e-62 243.8 233 55.4
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.4e-57 228.0 284 41.5
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.8e-55 220.3 239 50.6
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 1.0e-49 201.8 174 56.9
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 7.8e-45 185.7 349 34.7
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 7.8e-45 185.7 181 51.9
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.9e-44 183.7 173 56.6
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.5e-43 181.4 178 52.8
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 2.8e-42 177.2 185 50.8
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 6.4e-39 166.0 137 56.2
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 1.0e-36 158.7 129 58.1
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 3.9e-36 156.8 151 51.7
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.9e-35 154.5 298 33.2
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 2.1e-34 151.0 119 59.7
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 6.8e-33 146.0 113 54.9
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 9.8e-32 142.1 202 39.6
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 9.2e-30 135.6 350 30.0
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.0e-24 117.9 289 30.8
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.3e-19 100.1 72 62.5
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 3.1e-17 94.0 62 66.1
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.8e-08 63.2 62 54.8


User provided reference genes

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