Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 2.3e-160 568.9 299 100.0
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 1.0e-157 560.1 299 98.3
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 1.5e-143 513.1 299 92.0
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 6.2e-118 427.9 350 70.0
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 1.1e-117 427.2 297 78.8
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.7e-83 313.5 302 59.6
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.8e-80 303.5 302 58.3
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 2.4e-77 293.1 296 55.4
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 1.4e-72 277.3 299 54.5
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 7.4e-71 271.6 190 77.9
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 2.2e-70 270.0 304 53.9
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 4.8e-70 268.9 297 54.5
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 4.1e-69 265.8 303 55.4
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 5.3e-69 265.4 302 54.6
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 7.0e-69 265.0 297 54.5
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 2.6e-68 263.1 290 49.7
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 7.7e-68 261.5 230 64.8
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 8.5e-67 258.1 299 51.5
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 8.0e-65 251.5 387 46.0
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 1.0e-64 251.1 290 53.1
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 1.0e-64 251.1 296 51.7
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 1.4e-64 250.8 292 49.0
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 2.3e-64 250.0 298 53.7
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 5.2e-64 248.8 303 49.8
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 5.2e-64 248.8 305 51.1
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 8.8e-64 248.1 300 50.0
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 1.2e-63 247.7 300 51.3
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 1.5e-63 247.3 278 56.1
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 2.6e-63 246.5 302 52.0
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 8.2e-62 241.5 299 48.8
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 1.4e-61 240.7 245 56.7
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 2.4e-61 240.0 313 49.2
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 4.1e-61 239.2 300 50.7
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 5.3e-61 238.8 241 56.0
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 7.0e-61 238.4 307 48.9
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 9.1e-61 238.0 290 51.4
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 4.5e-60 235.7 300 50.0
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.0e-59 234.6 300 50.0
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 2.2e-59 233.4 306 48.0
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 5.0e-59 232.3 296 47.3
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 8.5e-59 231.5 298 47.7
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 2.5e-58 229.9 273 51.3
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 3.2e-58 229.6 305 48.2
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 5.5e-58 228.8 305 48.2
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 1.2e-57 227.6 305 46.2
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.6e-57 227.3 220 59.5
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 2.1e-57 226.9 304 46.7
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 3.6e-57 226.1 207 60.4
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 4.7e-57 225.7 252 50.4
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 1.0e-56 224.6 357 42.0
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 1.4e-56 224.2 268 48.9
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 3.0e-56 223.0 227 54.2
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 4.0e-56 222.6 238 58.0
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 6.8e-56 221.9 301 47.8
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 6.8e-56 221.9 297 45.8
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 2.0e-55 220.3 302 47.0
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 2.6e-55 219.9 318 47.8
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 3.7e-54 216.1 224 52.7
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 1.1e-53 214.5 209 56.5
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 1.8e-53 213.8 274 48.2
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 1.8e-53 213.8 275 46.9
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 2.4e-53 213.4 224 54.9
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 3.1e-53 213.0 244 50.8
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 3.1e-53 213.0 225 54.2
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 5.4e-53 212.2 292 45.2
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 1.6e-52 210.7 307 44.6
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 2.0e-52 210.3 238 52.5
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 2.0e-52 210.3 224 55.4
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 2.7e-52 209.9 309 44.7
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 3.5e-52 209.5 207 57.5
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 7.7e-52 208.4 254 48.4
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 7.7e-52 208.4 308 44.8
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 1.0e-51 208.0 234 53.0
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 1.3e-51 207.6 256 52.0
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 2.9e-51 206.5 220 55.5
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 3.8e-51 206.1 307 43.3
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 5.0e-51 205.7 255 51.0
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.1e-50 204.5 193 57.0
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 4.2e-50 202.6 302 45.0
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 3.6e-49 199.5 296 47.6
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 4.7e-49 199.1 231 50.2
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 1.0e-48 198.0 231 49.8
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 2.3e-48 196.8 227 48.9
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 5.2e-48 195.7 231 51.1
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 5.2e-48 195.7 290 46.6
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 1.2e-47 194.5 210 52.4
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 1.2e-47 194.5 290 44.1
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 1.5e-47 194.1 306 41.8
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 1.5e-47 194.1 297 43.4
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 1.7e-46 190.7 232 49.6
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 1.1e-45 188.0 316 42.7
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 1.4e-45 187.6 198 53.0
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 1.6e-44 184.1 304 42.1
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 4.5e-44 182.6 240 47.1
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 2.3e-43 180.3 364 39.3
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 5.2e-40 169.1 206 50.5
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 2.2e-38 163.7 176 52.3
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 2.5e-34 150.2 312 35.9
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 1.2e-33 147.9 298 37.6
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 5.6e-26 122.5 258 34.1
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 2.0e-23 114.0 235 40.9
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 5.4e-21 105.9 265 34.0
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 2.7e-20 103.6 234 34.2
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 1.3e-19 101.3 149 45.6
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.6e-19 98.6 122 45.1
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 1.9e-18 97.4 138 47.8
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 1.1e-16 91.7 62 74.2
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 1.3e-14 84.7 153 43.1
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.7e-14 84.3 127 46.5
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 6.4e-14 82.4 183 33.3
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 7.8e-12 75.5 125 37.6
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 8.7e-11 72.0 136 39.0
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 1.9e-10 70.9 135 35.6
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.5e-10 70.5 118 35.6
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 4.3e-10 69.7 96 40.6
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.1e-09 65.5 42 73.8
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 3.1e-08 63.5 105 39.0
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 6.9e-08 62.4 59 47.5


User provided reference genes

Program Settings