Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.6e-89 332.0 169 100.0
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.6e-89 332.0 169 100.0
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.7e-86 322.0 169 95.9
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.0e-85 320.1 169 95.3
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.0e-85 318.5 186 90.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 4.3e-84 314.7 167 92.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 7.4e-84 313.9 169 91.7
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.6e-83 312.8 167 92.2
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.2e-83 312.4 169 91.1
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 2.2e-83 312.4 169 91.1
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 4.8e-83 311.2 169 90.5
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 4.8e-83 311.2 169 91.1
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 6.3e-83 310.8 169 91.7
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.1e-82 310.1 169 91.1
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.1e-82 310.1 169 90.5
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.4e-82 309.7 169 90.5
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.4e-82 309.7 168 89.9
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.8e-82 309.3 169 91.1
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.4e-82 308.9 168 90.5
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 2.4e-82 308.9 169 90.5
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 4.1e-82 308.1 169 89.3
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 5.3e-82 307.8 169 90.5
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 5.3e-82 307.8 166 88.6
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 6.9e-82 307.4 169 89.3
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 6.9e-82 307.4 168 91.7
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 6.9e-82 307.4 169 89.3
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.5e-81 306.2 167 89.8
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.6e-81 305.4 166 89.8
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.6e-81 305.4 166 89.8
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.6e-81 305.4 166 89.8
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.6e-81 305.4 166 89.8
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 3.4e-81 305.1 169 89.9
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.5e-81 304.7 169 89.3
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.5e-81 304.7 166 89.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 4.5e-81 304.7 168 88.7
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 7.7e-81 303.9 192 83.3
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 7.7e-81 303.9 169 88.8
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.3e-80 303.1 167 86.8
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.7e-80 302.8 168 88.1
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.2e-80 302.4 168 88.1
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 2.9e-80 302.0 166 87.3
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.8e-80 301.6 169 88.2
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 3.8e-80 301.6 169 87.0
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.8e-80 301.6 167 89.8
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 6.5e-80 300.8 169 88.8
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 86.4
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.4e-79 299.7 166 87.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.9e-79 299.3 169 86.4
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 87.6
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 86.4
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 5.5e-79 297.7 169 87.0
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 5.5e-79 297.7 169 86.4
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 5.5e-79 297.7 169 87.6
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 2.1e-78 295.8 182 80.8
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.1e-78 295.8 169 85.2
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.7e-78 295.4 169 85.2
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 4.6e-78 294.7 169 84.6
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 6.1e-78 294.3 169 87.0
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 87.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-77 293.1 183 80.9
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-77 293.1 183 81.4
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-77 293.1 183 81.4
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.4e-77 293.1 207 73.4
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.8e-77 292.7 169 83.4
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 84.0
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 84.0
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 5.1e-77 291.2 169 82.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 82.8
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 82.8
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 84.6
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 5.7e-76 287.7 168 85.1
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 85.8
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 84.0
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 84.0
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.3e-75 286.6 169 83.4
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 4.8e-75 284.6 226 68.1
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 4.8e-75 284.6 149 94.0
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 6.3e-75 284.3 169 83.4
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 8.2e-75 283.9 169 82.2
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.4e-74 283.1 169 82.2
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 82.2
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.1e-74 280.4 167 82.6
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 9.1e-74 280.4 167 80.8
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-73 279.6 149 89.9
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 2.0e-73 279.3 149 89.3
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.6e-73 278.9 214 69.2
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 81.7
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 81.7
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 5.9e-73 277.7 169 79.3
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 7.7e-73 277.3 197 72.1
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 7.7e-73 277.3 169 79.3
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.0e-72 276.9 148 90.5
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.3e-72 276.6 169 81.7
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 2.9e-72 275.4 149 89.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 5.0e-72 274.6 169 77.5
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.5e-72 274.2 158 86.1
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-71 273.5 169 78.7
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.1e-71 273.5 143 93.0
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.5e-71 272.3 149 86.6
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.5e-71 272.3 167 79.0
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.2e-71 271.9 147 88.4
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 5.5e-71 271.2 158 85.4
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 7.2e-71 270.8 169 80.5
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 9.4e-71 270.4 153 86.3
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 9.4e-71 270.4 145 90.3
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.6e-70 269.6 169 79.9
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.0e-69 266.9 153 86.9
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.8e-69 266.2 166 78.9
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 3.3e-68 261.9 166 78.9
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-68 261.2 177 76.3
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 7.4e-68 260.8 239 60.3
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 3.7e-67 258.5 150 83.3
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 8.2e-67 257.3 167 72.5
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 4.1e-66 255.0 166 75.9
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 2.0e-65 252.7 124 98.4
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 5.0e-64 248.1 149 81.2
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 3.2e-63 245.4 165 74.5
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 9.4e-63 243.8 126 92.1
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-62 243.0 156 79.5
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.9e-61 238.4 170 75.9
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.6e-60 235.7 149 77.2
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.7e-59 231.9 166 71.1
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 4.8e-59 231.5 169 72.8
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 3.1e-58 228.8 124 94.4
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.2e-57 226.9 152 75.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.5e-57 224.9 123 84.6
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 3.8e-56 221.9 124 89.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 5.0e-56 221.5 191 60.2
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 4.2e-55 218.4 166 68.7
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 4.2e-55 218.4 157 68.2
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.2e-55 217.6 132 82.6
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.6e-54 216.5 168 68.5
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 3.6e-54 215.3 121 87.6
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 4.7e-54 214.9 121 86.8
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 4.7e-54 214.9 121 86.8
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-53 213.8 121 86.0
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.0e-53 212.2 123 85.4
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 4.4e-52 208.4 124 86.3
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-50 203.0 148 72.3
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.1e-50 202.2 157 72.0
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.6e-49 199.9 141 73.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 7.7e-49 197.6 136 69.9
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 4.8e-43 178.3 106 84.9
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.0e-41 172.9 90 85.6
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 3.8e-40 168.7 90 90.0
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-38 163.3 94 91.5
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.2e-33 147.1 83 90.4
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.7e-32 143.3 103 68.9
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.4e-28 128.6 94 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 9.8e-28 127.5 99 64.6
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.9e-27 125.2 73 89.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-26 123.6 82 74.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 4.1e-26 122.1 103 63.1
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-23 114.0 75 73.3
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.1e-22 109.8 75 69.3
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.6e-22 109.0 74 73.0
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.7e-19 99.0 64 76.6
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.4e-18 95.1 65 75.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 9.2e-18 94.4 156 38.5
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.6e-17 93.6 143 39.9
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.9e-15 86.7 49 89.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.9e-15 86.7 49 89.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.8e-13 80.1 44 77.3
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-13 80.1 108 50.0
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 6.8e-13 78.2 165 36.4
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.4e-11 71.6 38 81.6


User provided reference genes

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