Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 4.8e-205 717.6 369 100.0
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 4.2e-201 704.5 369 97.8
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 2.5e-193 678.7 370 95.4
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 3.3e-177 625.2 369 87.3
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 6.0e-163 577.8 373 81.5
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.2e-160 570.1 372 81.7
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 7.6e-150 534.3 376 77.1
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 6.9e-127 458.0 293 78.5
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 1.5e-126 456.8 371 66.3
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 2.0e-126 456.4 369 66.9
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.4e-124 450.3 351 69.8
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.9e-124 449.9 318 73.0
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 3.2e-124 449.1 321 74.1
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 1.2e-123 447.2 342 67.8
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 1.6e-123 446.8 366 65.6
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.1e-123 446.4 318 72.6
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 3.6e-123 445.7 360 66.1
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 4.6e-123 445.3 301 73.4
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 3.0e-122 442.6 336 69.3
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 3.0e-122 442.6 320 71.9
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 5.1e-122 441.8 372 64.2
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 5.1e-122 441.8 343 67.1
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 5.1e-122 441.8 369 64.0
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 6.7e-122 441.4 316 72.2
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 2.5e-121 439.5 335 68.1
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 4.3e-121 438.7 368 64.7
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 7.4e-121 438.0 292 74.3
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 9.7e-121 437.6 292 73.3
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 9.7e-121 437.6 322 70.5
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.7e-120 436.8 343 68.5
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 2.2e-120 436.4 291 73.9
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 2.8e-120 436.0 289 75.1
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 8.2e-120 434.5 316 70.3
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 8.2e-120 434.5 320 70.6
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.4e-119 433.7 333 67.0
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 1.4e-119 433.7 361 64.3
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 4.1e-119 432.2 335 68.4
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 4.1e-119 432.2 369 63.1
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 9.1e-119 431.0 322 69.3
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 9.1e-119 431.0 318 66.7
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 9.1e-119 431.0 314 69.7
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 9.1e-119 431.0 291 73.5
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.2e-118 430.6 289 72.3
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 4.5e-118 428.7 340 67.4
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 5.9e-118 428.3 321 67.6
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 7.7e-118 427.9 301 71.4
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.0e-117 427.6 362 63.5
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 1.7e-117 426.8 315 68.6
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 2.9e-117 426.0 301 70.1
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 5.0e-117 425.2 292 71.9
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 5.0e-117 425.2 292 72.6
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 5.0e-117 425.2 330 67.6
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 1.1e-116 424.1 292 71.2
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 2.5e-116 422.9 292 71.6
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 2.5e-116 422.9 292 71.6
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 2.5e-116 422.9 292 71.6
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 4.2e-116 422.2 337 66.5
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 5.5e-116 421.8 373 60.9
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 5.5e-116 421.8 360 62.5
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 7.2e-116 421.4 292 71.2
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 9.4e-116 421.0 337 65.3
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 9.4e-116 421.0 368 60.6
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 2.7e-115 419.5 342 63.7
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 2.7e-115 419.5 340 64.7
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 4.7e-115 418.7 290 71.4
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 6.1e-115 418.3 290 71.7
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 1.0e-114 417.5 291 71.5
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 5.1e-114 415.2 342 64.9
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 8.8e-114 414.5 329 64.7
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 3.3e-113 412.5 408 56.4
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 1.3e-112 410.6 282 75.9
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 1.3e-112 410.6 292 73.6
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 4.8e-112 408.7 307 66.4
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 4.1e-111 405.6 358 61.5
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 5.3e-111 405.2 317 65.3
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 8.5e-109 397.9 281 70.1
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 1.4e-108 397.1 320 64.1
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 1.6e-107 393.7 300 66.3
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 5.2e-106 388.7 265 74.3
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 8.8e-106 387.9 265 73.6
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 3.3e-105 386.0 297 69.0
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 2.8e-104 382.9 302 63.6
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 1.7e-101 373.6 467 46.7
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 4.7e-99 365.5 496 44.2
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 3.4e-97 359.4 265 67.2
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.4e-95 354.0 362 56.1
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 2.7e-94 349.7 545 41.8
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.0e-93 347.8 270 68.1
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 2.9e-93 346.3 341 57.8
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 2.9e-93 346.3 242 73.1
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 3.8e-93 345.9 384 52.9
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 3.6e-91 339.3 271 66.1
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.5e-89 334.0 232 70.3
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 2.6e-89 333.2 258 70.2
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.7e-88 329.3 287 59.6
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 5.4e-87 325.5 307 55.0
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.2e-86 324.3 233 69.1
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.5e-84 317.4 293 55.6
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 2.5e-84 316.6 301 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 6.1e-83 312.0 285 55.8
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 4.5e-78 295.8 184 78.3
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 3.4e-73 279.6 368 49.5
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.1e-60 238.0 194 66.0
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.8e-59 233.4 201 57.7
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 1.9e-55 220.7 142 73.9
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 2.7e-54 216.9 299 42.8
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 1.1e-52 211.5 197 59.9
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.9e-52 210.7 170 61.8
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 5.8e-49 199.1 193 52.3
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 1.3e-48 198.0 299 39.5
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 6.6e-45 185.7 234 48.3
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 4.0e-42 176.4 199 52.8
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 9.0e-34 148.7 216 40.7
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 2.3e-29 134.0 169 44.4
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 4.3e-28 129.8 105 60.0
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 4.3e-28 129.8 98 67.3
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 4.5e-25 119.8 109 58.7
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.0e-24 118.6 107 58.9
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.7e-22 110.5 114 57.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 2.3e-21 107.5 91 59.3
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 6.9e-18 95.9 64 75.0
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 3.2e-15 87.0 77 51.9
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 2.1e-14 84.3 147 34.0
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 75 58.7
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 57 70.2
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 57 70.2
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 1.1e-12 78.6 55 67.3
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 7.4e-12 75.9 132 38.6


User provided reference genes

Program Settings