Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 0.0e+00 1547.7 809 100.0
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 0.0e+00 1482.6 803 96.5
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 0.0e+00 1416.0 809 90.2
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 0.0e+00 1378.6 807 89.2
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 0.0e+00 1374.8 807 88.8
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 0.0e+00 1291.2 808 84.0
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 3.9e-308 1061.2 564 97.7
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 1.9e-307 1058.9 808 67.5
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 9.6e-307 1056.6 815 67.2
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 4.1e-305 1051.2 811 67.8
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 8.5e-303 1043.5 807 67.5
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 3.0e-300 1035.0 781 67.6
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.8e-297 1025.8 807 65.8
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 9.1e-297 1023.5 835 65.1
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 2.2e-295 1018.8 824 65.7
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.6e-293 1012.7 820 66.3
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 3.6e-293 1011.5 798 65.4
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 1.4e-292 1009.6 799 64.6
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 2.6e-291 1005.4 815 66.5
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.4e-289 999.6 796 65.7
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 1.0e-287 993.4 797 64.7
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 1.7e-287 992.6 798 64.2
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 3.8e-287 991.5 814 64.7
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.4e-286 989.6 807 65.1
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 9.4e-286 986.9 806 64.6
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 4.7e-285 984.6 797 64.4
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.8e-284 982.6 796 64.1
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 3.9e-284 981.5 792 65.4
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 8.8e-284 980.3 762 66.4
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.4e-283 978.0 814 63.0
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.7e-283 977.6 803 62.9
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 7.0e-281 970.7 811 64.5
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 3.5e-280 968.4 762 66.0
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.5e-279 963.8 796 64.6
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 8.5e-279 963.8 797 63.2
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.1e-277 959.1 796 64.2
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 3.6e-277 958.4 823 62.0
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.6e-277 958.4 808 64.4
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 6.1e-277 957.6 796 64.3
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.3e-276 955.7 794 64.6
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 8.8e-276 953.7 812 62.6
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 4.4e-275 951.4 796 62.9
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.8e-274 948.0 811 63.1
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 2.4e-273 945.7 791 63.1
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 7.0e-273 944.1 808 63.1
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 2.0e-272 942.6 821 62.2
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 2.0e-272 942.6 815 62.7
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 5.9e-272 941.0 794 64.2
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.7e-271 939.5 845 60.7
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.8e-271 938.3 792 62.8
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 2.5e-270 935.6 799 63.3
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 1.2e-269 933.3 796 63.2
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 6.1e-269 931.0 800 61.2
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 4.0e-268 928.3 793 62.0
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 4.4e-267 924.9 791 61.8
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 4.8e-266 921.4 799 63.1
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 7.0e-265 917.5 806 59.7
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 2.0e-264 916.0 815 60.4
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 2.3e-263 912.5 803 61.3
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.1e-262 910.2 802 59.5
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 1.1e-262 910.2 787 61.9
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 1.5e-262 909.8 810 60.1
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 2.5e-262 909.1 790 60.1
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 2.5e-262 909.1 797 60.4
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 2.5e-262 909.1 815 59.9
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 7.2e-262 907.5 851 60.2
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 2.8e-258 895.6 788 61.9
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 8.3e-258 894.0 788 62.1
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 7.0e-257 891.0 797 60.0
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.7e-256 889.0 709 65.7
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.5e-256 888.6 794 62.1
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 4.5e-256 888.3 786 59.3
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 3.8e-255 885.2 797 59.7
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 3.8e-255 885.2 792 59.2
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.9e-254 882.9 798 60.9
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 3.3e-254 882.1 789 60.7
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 3.3e-254 882.1 789 61.0
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 3.6e-253 878.6 796 60.7
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 4.7e-253 878.2 798 60.5
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.7e-253 878.2 801 60.5
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 6.1e-253 877.9 796 60.6
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.8e-252 876.3 796 60.2
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.2e-251 873.6 799 60.1
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.1e-249 865.1 798 59.4
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 3.0e-247 859.0 769 59.0
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 2.5e-246 855.9 798 60.4
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 2.5e-246 855.9 798 60.4
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 2.5e-246 855.9 798 60.4
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.6e-245 853.2 792 60.2
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 2.0e-243 846.3 806 58.8
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 4.4e-243 845.1 805 59.1
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 4.9e-242 841.6 805 58.8
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 2.0e-235 819.7 825 54.9
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.5e-219 766.9 640 67.5
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.1e-213 746.5 795 51.9
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.4e-212 743.8 652 63.2
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.0e-212 742.3 652 63.0
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.3e-207 726.5 797 51.3
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 3.1e-204 716.1 798 52.6
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 9.7e-182 641.3 635 55.4
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.4e-171 606.3 458 68.3
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 2.7e-168 596.7 468 69.9
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 6.7e-167 592.0 472 65.9
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 2.2e-165 587.0 847 44.6
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 7.7e-163 578.6 476 66.0
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 9.7e-158 561.6 464 63.8
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.7e-157 560.8 464 64.0
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.7e-157 560.8 464 63.1
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 8.2e-157 558.5 464 67.7
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 4.5e-155 552.7 487 60.4
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.0e-154 551.6 473 65.1
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 3.4e-150 536.6 462 61.7
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 3.4e-150 536.6 462 61.7
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 4.8e-149 532.7 699 46.5
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 3.8e-146 523.1 425 65.4
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.6e-144 517.7 459 62.3
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 1.2e-142 511.5 457 58.6
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.4e-142 509.6 456 59.9
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.8e-141 506.9 461 61.0
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.9e-141 506.1 460 59.1
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 3.1e-140 503.4 461 59.4
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.0e-138 498.4 459 61.4
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.1e-137 495.0 506 53.6
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.8e-135 487.6 735 42.3
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.5e-134 484.6 456 59.6
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 7.0e-132 475.7 459 58.2
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 9.2e-132 475.3 710 44.6
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 1.9e-129 467.6 457 56.2
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 9.5e-129 465.3 458 57.0
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 9.5e-129 465.3 456 56.4
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 1.2e-128 464.9 473 57.7
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 2.1e-128 464.2 458 56.8
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.4e-127 461.5 463 56.2
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 5.8e-126 456.1 755 40.1
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 3.9e-122 443.4 746 38.3
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 5.1e-114 416.4 465 52.9
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.2e-108 396.7 294 71.8
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.2e-94 352.1 312 62.8
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.6e-94 350.9 455 45.1
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 6.0e-91 339.7 278 66.5
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.8e-88 330.1 656 37.3
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.9e-82 310.5 220 75.9
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.5e-78 298.5 197 79.2
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.0e-61 240.4 166 73.5
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.0e-61 240.4 166 73.5
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 4.7e-59 233.8 363 41.6
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 2.0e-54 218.4 453 35.3
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 2.7e-51 208.0 359 38.2
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 1.8e-47 195.3 432 31.9
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 4.1e-47 194.1 147 63.3
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 7.0e-47 193.4 146 62.3
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 2.5e-44 184.9 140 63.6
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.4e-25 120.9 155 43.9
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.8e-25 119.8 91 63.7
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.3e-24 119.4 155 43.2
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.5e-17 95.9 87 64.4
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.7e-16 92.4 70 57.1
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 5.6e-12 77.4 94 42.6
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.1e-11 75.5 54 64.8


User provided reference genes

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