Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 0.0e+00 2382.1 1215 100.0
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 0.0e+00 2292.7 1248 94.2
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 0.0e+00 1850.5 1250 77.4
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 0.0e+00 1750.7 1248 75.3
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 0.0e+00 1743.4 1264 73.3
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1091.6 1294 50.6
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 8.0e-281 971.1 1266 46.4
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 2.5e-274 949.5 1258 46.7
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 4.3e-274 948.7 1263 46.1
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 4.7e-273 945.3 1271 47.3
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 2.4e-269 932.9 1290 44.8
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 3.2e-269 932.6 1273 46.7
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.3e-259 899.8 1294 44.7
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 8.6e-259 897.9 1262 44.5
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 8.6e-259 897.9 1311 43.9
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 1.6e-257 893.6 1266 44.7
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 2.4e-253 879.8 1256 43.3
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 3.0e-251 872.8 1257 43.5
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 1.6e-249 867.1 1257 43.1
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 4.7e-249 865.5 1255 45.4
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 7.6e-247 858.2 1312 42.5
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.8e-240 837.0 1309 42.4
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 6.6e-235 818.5 1293 42.3
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 9.6e-234 814.7 1265 42.3
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 6.2e-233 812.0 1292 40.4
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 8.1e-233 811.6 1293 40.9
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.8e-232 810.4 1285 41.6
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.5e-231 807.4 1255 40.6
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 2.6e-231 806.6 1184 45.1
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 2.2e-230 803.5 1306 40.1
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 2.9e-230 803.1 1262 42.5
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 3.8e-230 802.7 1303 41.4
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 6.2e-225 785.4 1280 40.9
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 8.1e-225 785.0 1358 39.7
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 1.4e-224 784.3 1284 40.8
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 1.8e-224 783.9 1262 42.5
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 2.4e-224 783.5 1303 39.8
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 4.9e-222 775.8 1306 40.7
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 9.3e-221 771.5 1281 40.4
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 2.1e-220 770.4 1271 40.7
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 3.0e-219 766.5 1260 41.8
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 2.6e-215 753.4 1280 39.8
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 4.2e-213 746.1 1293 38.7
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 4.8e-209 732.6 1273 39.5
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.7e-207 725.3 1286 38.8
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 2.5e-205 720.3 1290 39.1
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.7e-204 716.8 1314 38.4
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 3.6e-204 716.5 1257 39.9
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.3e-203 713.8 1292 39.6
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 4.3e-202 709.5 1318 37.9
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.1e-200 704.9 1336 37.6
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 1.3e-198 698.0 1255 39.8
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.1e-189 668.3 1283 37.6
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 1.1e-189 668.3 1284 37.8
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.2e-189 666.8 1284 37.9
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.1e-184 651.7 1187 39.7
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 4.8e-177 626.3 1316 35.8
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.2e-172 611.7 1215 37.4
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 3.7e-169 600.1 832 44.0
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 4.8e-169 599.7 1285 35.3
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.5e-167 593.6 1224 36.5
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 2.5e-165 587.4 1367 33.7
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 7.2e-165 585.9 1288 34.7
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.7e-161 574.7 1254 34.1
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 7.5e-154 549.3 1264 35.5
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.0e-151 541.2 1232 35.1
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 5.0e-150 536.6 1298 33.5
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 4.0e-147 526.9 1231 34.4
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.1e-141 508.8 1285 30.3
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 3.3e-141 507.3 1277 34.1
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 9.5e-141 505.8 1263 33.3
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.8e-140 504.2 1060 33.8
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.2e-135 488.8 1255 33.5
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 7.8e-135 486.1 1253 32.6
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 7.3e-133 479.6 838 36.4
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.2e-132 476.5 1253 33.0
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 2.4e-131 474.6 1263 32.8
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 3.1e-131 474.2 1264 31.3
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 6.8e-131 473.0 1255 33.1
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 8.9e-131 472.6 1254 33.3
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 3.8e-129 467.2 1256 32.9
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 2.4e-123 448.0 701 40.8
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.5e-122 445.3 735 44.1
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.4e-120 438.7 1259 30.8
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 4.3e-109 400.6 1219 29.9
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 9.3e-104 382.9 1345 29.7
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.8e-100 370.5 652 36.3
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 6.9e-99 366.7 1253 30.0
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 5.0e-97 360.5 1039 32.1
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.4e-96 359.0 532 45.1
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 2.8e-84 318.2 794 34.0
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.0e-81 309.7 654 34.1
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.8e-81 307.8 794 33.9
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.7e-78 297.0 529 36.7
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.8e-75 288.9 1197 28.0
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.4e-67 262.7 1495 25.7
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 8.8e-62 243.4 162 69.1
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 1.5e-53 216.1 1375 25.7
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.5e-48 199.5 1086 25.9
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 5.9e-42 177.6 105 77.1
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 5.2e-38 164.5 856 27.9
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 9.5e-32 143.7 246 36.6
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.1e-30 140.2 151 46.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.2e-29 136.7 77 87.0
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.6e-29 135.6 77 85.7
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 3.4e-29 135.2 190 40.0
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.3e-28 133.3 309 34.0
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.4e-27 129.0 75 82.7
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 6.0e-26 124.4 178 39.9
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.9e-25 121.7 205 37.6
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 4.9e-20 104.8 237 34.6
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 8.4e-20 104.0 278 32.7
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 9.2e-19 100.5 107 49.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 4.6e-18 98.2 122 38.5
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 3.9e-17 95.1 85 49.4
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 4.3e-16 91.7 234 32.9
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 9.6e-16 90.5 270 30.0
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 1.4e-14 86.7 176 31.2
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.4e-14 85.9 264 37.1
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.1e-14 85.5 304 28.0
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 5.2e-14 84.7 134 42.5
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 2.4e-11 75.9 154 33.8
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 4.6e-10 71.6 113 32.7
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 3.0e-09 68.9 229 27.9
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 5.1e-09 68.2 51 56.9
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 8.7e-09 67.4 61 50.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.5e-08 65.9 66 50.0
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 7.3e-08 64.3 50 58.0
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 7.3e-08 64.3 148 27.7
AT2G43410 Arabidopsis thaliana HOM05D002300 ORTHO05D002340 1.6e-07 63.2 120 28.3
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 2.1e-07 62.8 159 26.4
Thhalv10001307m.g Eutrema salsugineum HOM05D002300 ORTHO05D002340 2.1e-07 62.8 115 29.6
AL4G42150 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 2.8e-07 62.4 120 28.3
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 3.6e-07 62.0 118 29.7
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 8.1e-07 60.8 116 31.0
C08p34540 Brassica napus HOM05D002300 ORTHO05D002340 8.1e-07 60.8 115 30.4
BolC8t51055H Brassica oleracea HOM05D002300 ORTHO05D002340 8.1e-07 60.8 115 30.4
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 8.1e-07 60.8 116 31.0
Sp4g25510 Schrenkiella parvula HOM05D002300 ORTHO05D002340 8.1e-07 60.8 118 28.8
Ah.13g073790 Amaranthus hybridus HOM05D002300 ORTHO05D002340 1.1e-06 60.5 199 23.1
Nitab4.5_0006064g0040 Nicotiana tabacum HOM05D002300 ORTHO05D002340 1.1e-06 60.5 71 38.0
THA.LOC104803786 Tarenaya hassleriana HOM05D002300 ORTHO05D002340 1.4e-06 60.1 118 28.0
Carub.0004s2588 Capsella rubella HOM05D002300 ORTHO05D002340 1.8e-06 59.7 120 27.5
Pp3c11_21890 Physcomitrium patens HOM05D002300 ORTHO05D002340 1.8e-06 59.7 71 33.8
AUR62002349 Chenopodium quinoa HOM05D002300 ORTHO05D002340 2.4e-06 59.3 196 23.0
AUR62023840 Chenopodium quinoa HOM05D002300 ORTHO05D002340 2.4e-06 59.3 196 23.0
Sopen06g008320 Solanum pennellii HOM05D002300 ORTHO05D002340 2.4e-06 59.3 88 35.2
Aa31LG1G25160 Aethionema arabicum HOM05D002300 ORTHO05D002340 3.1e-06 58.9 115 27.8
BcaC07g40485 Brassica carinata HOM05D002300 ORTHO05D002340 3.1e-06 58.9 113 30.1
BolC4t22079H Brassica oleracea HOM05D002042 ORTHO05D002340 3.1e-06 58.9 106 30.2
AL5G41460 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 4.0e-06 58.5 114 28.9
Glyma.13G345300 Glycine max HOM05D002300 ORTHO05D002340 5.3e-06 58.2 71 38.0
Medtr4g068120 Medicago truncatula HOM05D002300 ORTHO05D002340 5.3e-06 58.2 71 36.6
arahy.Tifrunner.gnm1.ann1.L2JJZ6 Arachis hypogaea HOM05D002300 ORTHO05D002340 6.9e-06 57.8 126 27.0
arahy.Tifrunner.gnm1.ann1.RX7M1F Arachis hypogaea HOM05D002300 ORTHO05D002340 6.9e-06 57.8 126 27.0
A05p03760 Brassica napus HOM05D002300 ORTHO05D002340 6.9e-06 57.8 76 34.2


User provided reference genes

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