Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 2.9e-249 864.8 432 100.0
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 4.1e-248 860.9 432 99.3
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 2.1e-244 848.6 432 98.1
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 1.6e-236 822.4 434 94.9
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.6e-231 805.8 432 92.1
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 8.1e-228 793.5 455 87.7
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 7.7e-210 733.8 433 85.9
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 3.0e-190 668.7 448 72.8
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 1.5e-189 666.4 433 74.8
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 1.5e-189 666.4 435 74.7
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 7.4e-189 664.1 433 75.3
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 1.3e-188 663.3 433 74.6
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 3.0e-182 642.1 440 71.8
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 5.2e-182 641.3 425 73.9
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 3.3e-181 638.6 431 71.0
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 4.4e-181 638.3 437 71.9
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 9.7e-181 637.1 431 71.0
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 1.3e-180 636.7 423 73.0
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 1.7e-180 636.3 417 73.4
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 2.8e-180 635.6 423 72.3
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 3.7e-180 635.2 419 74.0
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 4.8e-180 634.8 419 74.0
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 6.3e-180 634.4 433 71.1
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 7.0e-179 630.9 431 71.9
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 9.1e-179 630.6 422 72.3
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 2.0e-178 629.4 449 70.6
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 5.9e-178 627.9 421 72.7
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 2.9e-177 625.5 420 73.3
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 5.0e-177 624.8 453 68.0
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 5.0e-177 624.8 435 70.3
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 1.1e-176 623.6 423 71.9
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 2.5e-176 622.5 419 71.8
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 3.2e-176 622.1 423 71.6
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 5.5e-176 621.3 430 69.3
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 2.1e-175 619.4 422 71.6
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 3.6e-175 618.6 420 71.9
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 1.4e-174 616.7 423 68.8
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 5.2e-174 614.8 420 71.0
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 5.2e-174 614.8 423 70.9
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 4.4e-173 611.7 422 71.1
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 5.7e-173 611.3 430 69.3
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 7.5e-173 610.9 421 70.5
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 2.8e-172 609.0 423 70.0
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 2.8e-172 609.0 431 68.2
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 3.7e-172 608.6 431 68.7
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 1.4e-171 606.7 431 68.4
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 1.4e-171 606.7 424 70.8
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 1.4e-171 606.7 424 70.8
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 1.8e-171 606.3 421 70.1
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 4.1e-171 605.1 423 69.7
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 4.1e-171 605.1 422 69.2
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 3.5e-170 602.1 432 68.1
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 7.7e-170 600.9 432 67.6
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 1.0e-169 600.5 424 69.3
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 1.3e-169 600.1 419 68.5
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 1.7e-169 599.7 419 68.0
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 1.7e-169 599.7 422 69.2
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 3.8e-169 598.6 424 70.0
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 3.8e-169 598.6 419 70.6
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 1.5e-168 596.7 423 68.1
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 3.3e-168 595.5 424 69.6
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 3.3e-168 595.5 425 68.0
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 4.2e-168 595.1 424 69.6
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 4.2e-168 595.1 434 68.0
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 5.5e-168 594.7 424 69.8
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 7.2e-168 594.3 424 69.6
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 1.6e-167 593.2 421 67.7
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 1.6e-167 593.2 419 69.2
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 2.1e-167 592.8 433 67.4
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 2.1e-167 592.8 422 69.2
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 2.8e-167 592.4 419 69.9
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 3.6e-167 592.0 423 68.1
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 8.0e-167 590.9 434 67.5
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 1.8e-166 589.7 423 68.3
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 1.8e-166 589.7 423 67.8
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 5.2e-166 588.2 423 69.0
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 8.9e-166 587.4 423 68.1
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 1.2e-165 587.0 420 68.1
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 1.2e-165 587.0 420 68.1
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 1.2e-165 587.0 413 69.5
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 2.6e-165 585.9 420 66.4
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 4.4e-165 585.1 422 67.1
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 5.7e-165 584.7 424 67.7
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 1.3e-164 583.6 482 62.0
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 6.3e-164 581.3 421 66.7
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 6.3e-164 581.3 541 58.4
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 3.1e-163 578.9 424 66.0
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 4.1e-163 578.6 419 65.2
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 7.0e-163 577.8 422 68.2
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 1.0e-161 573.9 435 67.6
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 1.3e-161 573.5 424 66.0
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 2.5e-160 569.3 425 66.4
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 9.5e-160 567.4 425 66.1
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 2.8e-159 565.8 421 65.8
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 6.8e-158 561.2 421 65.1
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 7.5e-157 557.8 421 64.6
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 9.8e-157 557.4 421 64.8
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 6.0e-154 548.1 354 74.3
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 5.0e-153 545.0 427 63.0
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 1.6e-151 540.0 415 63.9
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 1.6e-151 540.0 422 61.8
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 2.1e-151 539.7 419 60.4
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 1.3e-140 503.8 431 57.1
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 3.0e-137 492.7 434 59.4
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 3.9e-137 492.3 420 56.0
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 8.6e-137 491.1 418 59.6
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 5.6e-136 488.4 335 71.6
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 3.1e-134 482.6 421 55.3
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 3.2e-131 472.6 423 54.4
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 7.6e-125 451.4 302 73.8
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 2.4e-123 446.4 353 64.6
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 1.9e-120 436.8 425 49.9
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 3.6e-119 432.6 271 76.8
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 5.8e-117 425.2 427 54.3
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 1.3e-111 407.5 265 74.0
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 1.4e-110 404.1 421 51.3
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 2.2e-84 317.0 198 77.8
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 3.8e-84 316.2 413 43.6
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 1.7e-76 290.8 235 58.7
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 3.9e-73 279.6 182 73.1
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 6.5e-68 262.3 291 50.5
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 6.8e-49 199.1 102 97.1
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 1.3e-47 194.9 136 69.1
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 5.2e-33 146.4 85 84.7
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 1.3e-28 131.7 90 65.6
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 6.6e-28 129.4 91 62.6
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 3.0e-12 77.4 362 22.9
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 1.1e-09 68.9 41 68.3
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 3.4e-08 63.9 91 41.8


User provided reference genes

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