Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 7.7e-98 360.5 189 100.0
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 3.8e-97 358.2 189 99.5
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 3.2e-96 355.1 189 98.4
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 8.8e-86 320.5 189 91.0
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 1.0e-81 307.0 190 86.8
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 7.2e-80 300.8 191 86.4
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 1.2e-66 256.9 191 74.9
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 3.9e-65 251.9 192 71.9
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 6.6e-65 251.1 190 70.0
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 1.1e-64 250.4 191 72.3
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 1.6e-63 246.5 196 73.0
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 3.6e-63 245.4 195 72.8
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 1.4e-62 243.4 195 70.3
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 2.3e-62 242.7 193 69.9
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 4.0e-62 241.9 192 70.3
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 6.8e-62 241.1 190 70.5
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 1.3e-60 236.9 190 66.3
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 2.2e-60 236.1 188 69.1
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 6.4e-60 234.6 194 66.5
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 6.4e-60 234.6 194 66.5
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 5.4e-59 231.5 191 69.1
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 1.6e-58 229.9 193 69.4
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 1.6e-58 229.9 193 69.9
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 2.1e-58 229.6 190 68.4
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.7e-58 229.2 193 66.3
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.7e-58 229.2 193 66.3
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 2.7e-58 229.2 196 65.3
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 3.5e-58 228.8 196 68.9
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 4.6e-58 228.4 194 66.0
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 6.0e-58 228.0 190 64.7
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 7.8e-58 227.6 194 66.0
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 1.0e-57 227.3 193 68.4
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 3.0e-57 225.7 193 66.3
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 3.9e-57 225.3 190 66.3
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 6.6e-57 224.6 194 63.9
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 1.5e-56 223.4 192 66.7
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.9e-56 223.0 193 64.8
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 4.3e-56 221.9 193 64.8
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 4.3e-56 221.9 193 66.3
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 5.6e-56 221.5 194 63.9
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 9.5e-56 220.7 195 67.2
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 2.1e-55 219.5 192 63.5
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 2.8e-55 219.2 193 64.2
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.6e-55 218.8 193 64.2
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 8.1e-55 217.6 195 64.1
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 8.1e-55 217.6 194 62.4
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 3.1e-54 215.7 193 62.7
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 5.2e-54 214.9 183 66.1
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 8.9e-54 214.2 194 65.5
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 8.9e-54 214.2 193 63.2
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 3.4e-53 212.2 184 66.8
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.7e-52 209.9 194 62.9
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 2.2e-52 209.5 191 63.9
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 6.4e-52 208.0 192 62.0
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 8.3e-52 207.6 199 62.3
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 1.1e-51 207.2 193 62.2
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 1.4e-51 206.8 243 54.7
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 2.4e-51 206.1 194 62.4
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 3.2e-51 205.7 190 60.5
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 5.4e-51 204.9 188 61.2
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 7.1e-51 204.5 198 62.1
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 7.1e-51 204.5 193 61.1
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 9.2e-51 204.1 213 58.2
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 9.2e-51 204.1 188 60.6
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 2.1e-50 203.0 173 66.5
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 2.7e-50 202.6 200 60.5
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 2.7e-50 202.6 193 60.6
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 3.5e-50 202.2 191 61.3
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 1.0e-49 200.7 189 61.4
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 1.0e-49 200.7 189 60.3
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 2.3e-49 199.5 194 61.9
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 3.9e-49 198.7 194 60.3
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 6.6e-49 198.0 192 59.4
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 8.6e-49 197.6 190 60.0
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.5e-48 196.8 190 61.1
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 4.3e-48 195.3 191 61.8
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 7.3e-48 194.5 184 62.5
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 8.1e-47 191.0 190 58.4
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 1.1e-46 190.7 181 63.5
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 1.4e-46 190.3 193 59.6
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 3.1e-46 189.1 188 55.9
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 3.1e-46 189.1 188 55.9
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 4.0e-46 188.7 196 58.2
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 1.5e-45 186.8 171 61.4
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 3.4e-45 185.7 193 59.1
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 2.2e-44 183.0 198 54.0
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 2.9e-44 182.6 194 55.2
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.1e-43 180.6 187 55.1
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 2.4e-43 179.5 150 68.7
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 5.4e-43 178.3 192 54.2
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 7.1e-43 177.9 149 67.1
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 4.6e-42 175.3 192 55.2
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 8.7e-41 171.0 181 55.2
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 1.5e-40 170.2 193 53.4
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 7.3e-40 167.9 193 52.3
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 4.7e-39 165.2 193 49.7
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 2.0e-37 159.8 189 50.8
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 2.6e-37 159.5 200 49.0
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 1.9e-35 153.3 187 48.1
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 4.2e-35 152.1 194 48.5
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 5.4e-35 151.8 194 49.0
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 9.3e-35 151.0 146 61.6
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 1.2e-34 150.6 196 50.0
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 6.0e-34 148.3 206 45.1
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 7.8e-34 147.9 189 48.1
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 1.0e-33 147.5 189 46.6
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 5.1e-33 145.2 196 47.4
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 8.7e-33 144.4 127 70.1
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 5.6e-32 141.7 97 78.4
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 1.3e-31 140.6 189 46.0
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 8.1e-31 137.9 151 58.3
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 1.8e-30 136.7 189 43.9
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 1.8e-30 136.7 189 43.9
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 4.0e-30 135.6 222 42.8
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 4.0e-30 135.6 207 45.9
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 5.3e-30 135.2 200 41.5
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 2.9e-28 129.4 189 42.9
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 8.4e-28 127.9 82 84.1
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 2.1e-26 123.2 83 78.3
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.3e-25 120.6 83 75.9
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 1.5e-24 117.1 167 44.3
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 2.5e-24 116.3 83 74.7
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 3.7e-23 112.5 142 50.0
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 3.1e-22 109.4 110 58.2
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.2e-21 107.5 90 65.6
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 1.2e-21 107.5 149 47.0
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 1.5e-21 107.1 150 49.3
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 5.8e-21 105.1 108 62.0
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 2.2e-20 103.2 78 71.8
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 3.5e-18 95.9 59 83.1
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 4.6e-18 95.5 83 60.2
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 1.3e-17 94.0 155 42.6
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 1.8e-17 93.6 74 60.8
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 1.5e-16 90.5 57 86.0
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 1.6e-15 87.0 91 51.6
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 2.6e-13 79.7 106 48.1
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 4.9e-12 75.5 132 41.7
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 2.5e-11 73.2 177 33.3
Actinidia26604 Actinidia chinensis HOM05D005762 ORTHO05D006823 3.5e-10 69.3 76 59.2
SMO361G0607 Selaginella moellendorffii HOM05D028982 ORTHO05D378329 2.4e-06 56.6 42 66.7
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 4.1e-06 55.8 89 41.6


User provided reference genes

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