Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 1.9e-53 212.2 106 100.0
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 2.5e-53 211.8 106 99.1
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 3.6e-52 208.0 106 96.2
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 1.5e-50 202.6 106 94.3
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 4.1e-48 194.5 105 87.6
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 1.6e-47 192.6 107 90.7
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 1.6e-47 192.6 107 90.7
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 3.5e-47 191.4 107 86.9
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 2.9e-46 188.3 106 86.8
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 2.9e-46 188.3 106 86.8
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 2.9e-46 188.3 106 85.8
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 5.0e-46 187.6 106 86.8
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 8.5e-46 186.8 106 85.8
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 1.5e-45 186.0 105 85.7
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 1.9e-45 185.7 107 86.9
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 3.2e-45 184.9 106 85.8
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 9.5e-45 183.3 106 84.9
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 2.1e-44 182.2 105 81.0
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 2.8e-44 181.8 106 80.2
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 3.6e-44 181.4 106 84.9
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 3.6e-44 181.4 106 83.0
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 4.7e-44 181.0 106 82.1
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 6.1e-44 180.6 106 79.2
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 6.1e-44 180.6 106 81.1
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 1.0e-43 179.9 106 83.0
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 1.4e-43 179.5 106 80.2
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 1.4e-43 179.5 106 79.2
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 1.4e-43 179.5 105 81.0
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 2.3e-43 178.7 111 78.4
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 2.3e-43 178.7 106 84.0
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.3e-43 178.7 106 83.0
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 4.0e-43 177.9 106 82.1
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 4.0e-43 177.9 106 82.1
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 5.2e-43 177.6 106 80.2
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 5.2e-43 177.6 106 81.1
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 8.8e-43 176.8 106 82.1
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 8.8e-43 176.8 106 81.1
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 8.8e-43 176.8 106 81.1
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 8.8e-43 176.8 106 81.1
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 1.2e-42 176.4 107 77.6
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 1.2e-42 176.4 106 80.2
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.5e-42 176.0 106 81.1
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.5e-42 176.0 106 81.1
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.5e-42 176.0 106 81.1
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.5e-42 176.0 106 81.1
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 2.0e-42 175.6 106 78.3
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 2.0e-42 175.6 106 78.3
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 2.6e-42 175.3 106 76.4
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 3.4e-42 174.9 106 81.1
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 3.4e-42 174.9 104 79.8
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 4.4e-42 174.5 99 84.8
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 4.4e-42 174.5 106 80.2
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 4.4e-42 174.5 106 77.4
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 4.4e-42 174.5 105 81.0
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 5.7e-42 174.1 106 79.2
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 5.7e-42 174.1 106 77.4
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 7.5e-42 173.7 106 78.3
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 9.8e-42 173.3 107 77.6
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 9.8e-42 173.3 106 79.2
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 9.8e-42 173.3 106 80.2
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 1.3e-41 172.9 106 78.3
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 2.2e-41 172.2 101 81.2
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 2.8e-41 171.8 106 76.4
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 2.8e-41 171.8 106 73.6
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 3.7e-41 171.4 108 77.8
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 6.3e-41 170.6 107 78.5
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 6.3e-41 170.6 108 81.5
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 6.3e-41 170.6 106 77.4
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.3e-41 170.6 103 79.6
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 1.1e-40 169.9 106 72.6
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 1.4e-40 169.5 106 72.6
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 1.8e-40 169.1 106 74.5
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 1.8e-40 169.1 106 74.5
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 1.8e-40 169.1 106 77.4
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 2.4e-40 168.7 106 74.5
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.4e-40 168.7 106 74.5
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 2.4e-40 168.7 106 76.4
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 3.1e-40 168.3 106 76.4
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 4.1e-40 167.9 109 76.1
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 4.1e-40 167.9 106 73.6
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 4.1e-40 167.9 106 77.4
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 5.4e-40 167.5 116 72.4
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 7.0e-40 167.2 108 75.9
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 7.0e-40 167.2 106 73.6
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 7.0e-40 167.2 106 73.6
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 7.0e-40 167.2 112 73.2
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 9.2e-40 166.8 106 72.6
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 9.2e-40 166.8 111 71.2
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 9.2e-40 166.8 107 75.7
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 9.2e-40 166.8 107 74.8
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 9.2e-40 166.8 106 77.4
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 1.2e-39 166.4 106 77.4
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 1.6e-39 166.0 106 73.6
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 1.6e-39 166.0 106 76.4
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 1.6e-39 166.0 104 76.0
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 2.0e-39 165.6 106 76.4
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 2.0e-39 165.6 106 71.7
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.0e-39 165.6 106 74.5
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 2.7e-39 165.2 108 73.1
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 3.5e-39 164.9 107 72.9
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 3.5e-39 164.9 107 72.9
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 4.5e-39 164.5 108 76.9
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 7.8e-39 163.7 108 72.2
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 1.0e-38 163.3 106 72.6
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 1.3e-38 162.9 106 71.7
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 1.7e-38 162.5 106 74.5
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 1.7e-38 162.5 106 74.5
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 1.7e-38 162.5 107 72.9
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 2.9e-38 161.8 106 74.5
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 2.9e-38 161.8 106 74.5
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 2.9e-38 161.8 106 74.5
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 2.9e-38 161.8 106 71.7
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 3.8e-38 161.4 107 70.1
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 3.8e-38 161.4 107 70.1
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 3.8e-38 161.4 106 72.6
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 5.0e-38 161.0 106 73.6
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 6.6e-38 160.6 108 75.0
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 73.6
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 73.6
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 73.6
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 6.6e-38 160.6 108 75.0
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 73.6
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 73.6
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 73.6
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 8.6e-38 160.2 105 75.2
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 8.6e-38 160.2 106 71.7
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 1.5e-37 159.5 115 70.4
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 1.9e-37 159.1 109 74.3
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 1.9e-37 159.1 109 74.3
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 2.5e-37 158.7 106 70.8
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 3.3e-37 158.3 109 71.6
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 4.3e-37 157.9 106 76.4
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 1.2e-36 156.4 107 72.9
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 1.6e-36 156.0 107 72.9
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 2.8e-36 155.2 107 72.0
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 2.8e-36 155.2 107 72.0
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 2.8e-36 155.2 107 72.0
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 2.8e-36 155.2 119 66.4
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 4.7e-36 154.5 106 67.9
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 1.0e-35 153.3 98 74.5
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 8.0e-28 127.1 80 73.8
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 5.4e-24 114.4 69 75.4
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 5.4e-24 114.4 69 75.4
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 5.0e-22 107.8 104 55.8
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 1.6e-20 102.8 81 61.7
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 3.1e-19 98.6 52 88.5
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 8.9e-19 97.1 82 59.8
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 9.8e-18 93.6 56 78.6
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 8.3e-17 90.5 86 53.5
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 6.0e-15 84.3 106 50.0
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 5.2e-11 71.2 80 51.2
Dinv29105 Davidia involucrata HOM05D004859 ORTHO05D005807 3.0e-06 55.5 28 96.4
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 3.9e-06 55.1 86 44.2


User provided reference genes

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