Gene: AT5G16470
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G16470
- Transcript Identifier AT5G16470.1
- Gene Type Coding gene
- Location Chr5 : 5379516-5379830 : positive
Gene Family Information
- ID HOM05D004859
- #Genes/#Species 152/91
- Phylogenetic origin
- ID ORTHO05D005807
- #Genes/#Species 152/91
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G16470.1
- Alias MBS2,METHYLENE BLUE SENSITIVITY 2
- uniprot Q9FFD8
Descriptions
- Description zinc finger (C2H2 type) family protein
- Computational description zinc finger (C2H2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G02790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0080183 | ISS | Gene Ontology | response to photooxidative stress | |
| GO:0006355 | TAS | Gene Ontology | regulation of transcription, DNA-templated | 1 |
| GO:0010150 | IEP | Gene Ontology | leaf senescence | 2 |
| GO:0071452 | IMP | Gene Ontology | cellular response to singlet oxygen | 2 |
| GO:1900055 | IMP | Gene Ontology | regulation of leaf senescence | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010494 | IEA | GOA Database | cytoplasmic stress granule | |
| GO:0010494 | ISS | Gene Ontology | cytoplasmic stress granule | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA | Gene Ontology | nucleus | 2 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 2 |
| GO:0009536 | HDA | Gene Ontology | plastid | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
No InterPro domains detected for this gene.
| Mapman id | Description |
|---|---|
| 15.5.15 | RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF) |