Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.7e-66 255.8 122 100.0
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.7e-66 255.8 122 100.0
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.7e-62 240.7 122 93.4
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 7.5e-62 240.4 122 93.4
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 6.3e-61 237.3 122 91.0
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 8.3e-61 236.9 122 91.8
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.1e-57 226.5 109 100.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 6.8e-55 217.2 122 81.1
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 6.8e-55 217.2 122 81.1
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.7e-53 212.6 120 80.0
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 1.7e-53 212.6 119 81.5
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 3.5e-51 204.9 120 75.0
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 8.0e-48 193.7 120 69.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.3e-45 186.4 122 71.3
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 6.4e-45 184.1 120 67.5
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 9.2e-44 180.3 124 70.2
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 3.0e-42 175.3 122 64.8
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 9.5e-41 170.2 122 64.8
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 4.7e-40 167.9 122 65.6
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 5.8e-38 161.0 120 60.8
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 1.1e-33 146.7 105 65.7
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 7.3e-33 144.1 117 59.0
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.4e-31 139.8 127 54.3
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 5.2e-31 137.9 122 54.1
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 6.8e-31 137.5 120 54.2
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 8.9e-31 137.1 117 55.6
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.0e-30 136.0 120 54.2
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.6e-30 135.6 120 54.2
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 7.6e-30 134.0 126 49.2
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 7.6e-30 134.0 126 49.2
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 2.9e-29 132.1 117 53.0
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.9e-29 131.3 126 50.0
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 6.4e-29 131.0 120 54.2
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 6.4e-29 131.0 120 53.3
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 52.5
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 1.4e-28 129.8 126 50.0
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 2.4e-28 129.0 118 53.4
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 53.3
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.2e-28 128.6 120 52.5
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 4.2e-28 128.3 120 52.5
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 5.4e-28 127.9 120 51.7
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 7.1e-28 127.5 119 52.1
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 50.0
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 2.1e-27 125.9 122 51.6
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 2.1e-27 125.9 120 49.2
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.1e-27 125.9 111 54.1
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 2.7e-27 125.6 122 50.8
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 2.7e-27 125.6 120 49.2
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.6e-27 124.8 120 50.8
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 4.6e-27 124.8 127 48.0
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.3e-26 123.2 119 50.4
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 48.3
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.3e-26 123.2 111 53.2
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.3e-26 122.5 118 50.8
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 3.0e-26 122.1 120 51.7
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.9e-26 121.7 125 45.6
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 3.9e-26 121.7 120 50.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 5.1e-26 121.3 119 50.4
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 5.1e-26 121.3 120 48.3
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 5.1e-26 121.3 120 48.3
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 8.7e-26 120.6 127 47.2
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 8.7e-26 120.6 120 50.8
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 8.7e-26 120.6 120 50.8
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 8.7e-26 120.6 120 50.8
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 8.7e-26 120.6 120 50.8
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 8.7e-26 120.6 120 46.7
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.1e-25 120.2 120 50.8
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.1e-25 120.2 120 50.8
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.1e-25 120.2 120 51.7
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.5e-25 119.8 120 50.8
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.5e-25 119.8 120 50.0
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.5e-25 119.8 127 44.9
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.9e-25 119.4 120 50.0
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.9e-25 119.4 120 45.8
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 2.5e-25 119.0 120 50.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 2.5e-25 119.0 120 50.0
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 3.3e-25 118.6 120 45.8
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 3.3e-25 118.6 120 50.0
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 5.6e-25 117.9 120 50.0
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 5.6e-25 117.9 120 50.0
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 5.6e-25 117.9 120 50.0
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 7.3e-25 117.5 117 52.1
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.3e-24 116.7 120 50.0
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.3e-24 116.7 113 46.9
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.1e-24 115.9 120 48.3
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.1e-24 115.9 120 48.3
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 2.1e-24 115.9 120 48.3
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 2.8e-24 115.5 120 49.2
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.8e-24 115.5 121 49.6
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.6e-24 115.2 117 51.3
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 3.6e-24 115.2 113 47.8
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 3.6e-24 115.2 120 45.8
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 8.1e-24 114.0 119 47.1
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 8.1e-24 114.0 127 44.1
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.4e-23 113.2 120 49.2
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.2e-22 110.2 115 48.7
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 4.4e-22 108.2 122 46.7
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 3.8e-21 105.1 114 46.5
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 7.1e-20 100.9 127 41.7
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 4.6e-19 98.2 99 45.5
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.7e-18 96.3 117 44.4
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 2.3e-18 95.9 97 45.4
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 3.0e-18 95.5 124 39.5
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 8.7e-18 94.0 77 58.4
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 7.3e-17 90.9 123 38.2
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-16 90.1 74 58.1
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 2.9e-13 79.0 87 47.1
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 6.4e-13 77.8 53 60.4
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.4e-12 76.6 155 29.7
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 2.4e-12 75.9 121 32.2
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 7.1e-12 74.3 66 51.5
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 1.2e-11 73.6 52 57.7
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 1.6e-11 73.2 90 41.1
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 2.7e-11 72.4 80 46.2
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 3.5e-11 72.0 115 32.2
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 7.9e-11 70.9 117 33.3
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 7.9e-11 70.9 62 51.6
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 8.7e-10 67.4 45 64.4
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.5e-09 66.6 82 40.2
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 4.3e-09 65.1 94 40.4
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 9.6e-09 63.9 59 40.7
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.3e-08 63.5 71 47.9
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 6.2e-08 61.2 80 41.2
Lsat_1_v5_gn_2_14240 Lactuca sativa HOM05D005168 ORTHO05D006358 6.2e-08 61.2 56 46.4
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.4e-07 60.1 40 60.0
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 6.9e-07 57.8 114 34.2
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 6.9e-07 57.8 84 35.7
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 1.5e-06 56.6 119 31.1
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 1.5e-06 56.6 114 31.6
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.5e-06 56.6 115 33.9
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 1.5e-06 56.6 107 33.6
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 2.0e-06 56.2 54 44.4
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 5.8e-06 54.7 66 42.4
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 7.6e-06 54.3 108 30.6
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.0e-05 53.9 116 30.2


User provided reference genes

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