Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 0.0e+00 1175.6 615 100.0
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 0.0e+00 1076.2 612 93.3
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.8e-297 1025.4 613 89.6
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 6.3e-266 920.6 617 82.2
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 2.2e-258 895.6 594 82.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.7e-258 894.8 627 79.1
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 5.6e-222 774.6 596 73.0
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 4.5e-171 605.5 534 61.6
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.8e-151 540.4 611 52.4
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.2e-145 519.6 527 55.8
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 7.2e-145 518.5 615 50.4
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.7e-144 515.8 556 51.3
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.1e-142 511.1 649 48.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 3.1e-140 503.1 553 52.1
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 3.1e-140 503.1 526 54.2
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 7.0e-140 501.9 547 53.6
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.2e-139 501.1 659 48.6
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 5.9e-139 498.8 615 50.1
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 7.7e-139 498.4 548 53.6
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.7e-138 497.3 524 53.8
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 2.2e-138 496.9 540 53.0
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 8.5e-138 495.0 548 52.0
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.1e-137 494.6 603 49.9
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 2.5e-137 493.4 530 51.3
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.6e-136 490.7 580 49.5
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 6.1e-136 488.8 613 48.5
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.4e-135 487.6 554 51.3
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 4.0e-135 486.1 543 53.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 5.2e-135 485.7 542 51.8
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.7e-135 485.3 649 46.7
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 8.8e-135 485.0 542 52.0
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 5.7e-134 482.3 542 52.0
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 3.1e-132 476.5 532 52.3
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 4.1e-132 476.1 557 49.9
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.0e-130 471.5 564 48.0
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.0e-130 471.5 625 46.2
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.7e-130 470.7 608 46.7
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.0e-130 469.2 577 48.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.0e-127 461.5 547 50.1
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 6.8e-127 458.8 532 50.8
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 6.8e-127 458.8 532 50.8
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 8.8e-127 458.4 549 48.6
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 7.5e-126 455.3 526 49.2
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 7.5e-126 455.3 452 54.0
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.3e-125 454.5 536 49.4
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.1e-124 451.4 604 46.0
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.8e-124 450.7 543 48.4
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.1e-124 449.5 596 45.5
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 5.4e-124 449.1 545 49.2
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.3e-122 443.7 606 45.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 5.0e-122 442.6 601 46.8
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.1e-121 441.4 537 48.4
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.1e-121 441.4 551 47.2
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.5e-121 441.0 537 48.4
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.2e-120 438.0 581 46.3
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 6.1e-120 435.6 570 45.8
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 6.1e-120 435.6 528 46.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 6.1e-120 435.6 596 44.8
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.0e-119 433.3 515 48.2
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.2e-118 431.4 468 52.4
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 6.3e-117 425.6 543 45.9
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.4e-116 424.5 479 50.9
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.8e-116 424.1 551 47.0
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.1e-116 423.3 554 46.2
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 9.2e-116 421.8 550 45.8
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.1e-113 414.8 453 52.8
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.5e-113 414.5 447 52.8
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.5e-113 411.8 561 45.6
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.6e-112 411.0 516 45.3
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.6e-112 411.0 549 45.2
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.5e-110 404.4 468 50.4
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 2.0e-110 404.1 452 49.6
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.4e-110 402.9 602 43.4
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.2e-109 400.6 543 44.8
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 3.5e-107 393.3 545 44.6
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 3.5e-107 393.3 531 45.2
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 5.0e-106 389.4 553 44.1
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 7.3e-105 385.6 567 42.5
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.2e-104 384.8 547 42.8
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.1e-104 384.0 604 40.4
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.1e-104 384.0 511 45.4
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 3.6e-104 383.3 577 41.9
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.7e-101 374.4 594 41.2
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-100 371.7 547 42.2
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.4e-100 371.3 501 42.3
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.4e-100 369.4 538 43.7
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 6.0e-99 365.9 617 39.2
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 3.9e-98 363.2 625 41.0
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 6.6e-98 362.5 510 43.5
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.8e-95 354.4 532 41.9
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 5.2e-95 352.8 531 41.6
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 5.2e-95 352.8 531 41.6
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 5.2e-95 352.8 416 50.5
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 8.9e-95 352.1 504 45.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.2e-94 351.7 530 41.7
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.6e-94 350.5 531 41.4
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.4e-94 350.1 530 41.3
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.7e-93 347.8 494 43.5
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 4.9e-93 346.3 599 37.4
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.1e-91 340.9 533 40.0
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 7.8e-91 339.0 325 53.2
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.3e-90 337.4 525 40.6
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.8e-86 322.8 407 51.6
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 8.4e-85 318.9 263 60.1
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 5.6e-81 306.2 542 38.0
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.2e-80 305.1 527 37.2
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-80 305.1 546 37.4
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.8e-79 301.2 623 36.0
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 7.8e-75 285.8 526 35.4
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 2.0e-70 271.2 359 48.7
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 2.7e-67 260.8 341 49.0
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.6e-67 260.0 284 53.9
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 8.7e-66 255.8 179 65.9
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.5e-65 254.2 552 34.4
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.6e-62 244.2 176 65.9
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.2e-61 241.1 337 49.3
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.9e-57 228.0 397 39.3
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 3.7e-48 197.2 388 38.1
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 3.8e-45 187.2 139 64.0
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 6.5e-45 186.4 336 38.1
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 8.5e-45 186.0 378 36.8
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.4e-42 178.7 264 37.9
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.2e-40 171.4 631 25.4
PGSC0003DMG401012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.3e-37 162.2 102 93.1
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.1e-36 159.1 332 32.2
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 4.2e-36 157.1 251 37.1
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 6.1e-35 153.3 332 31.6
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.8e-34 151.8 446 29.1
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 2.6e-30 137.9 149 49.0
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.5e-30 137.5 89 67.4
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.5e-30 137.5 89 67.4
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 9.4e-28 129.4 302 31.1
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.2e-27 129.0 627 24.7
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.4e-23 114.8 113 55.8
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.6e-22 112.1 234 35.5
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.5e-22 110.5 354 28.0
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-17 95.9 319 27.0
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 8.3e-16 89.7 205 29.8
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-15 89.4 185 29.2
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-15 89.4 185 29.2
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.1e-15 89.4 185 29.2
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 3.1e-15 87.8 185 28.1
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 3.1e-15 87.8 185 28.1
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 9.1e-15 86.3 125 48.0
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.1e-07 62.8 54 50.0


User provided reference genes

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