Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g051040.1 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.3e-24 115.5 58 100.0
Sopen04g022340 Solanum pennellii HOM05D003027 ORTHO05D003455 2.6e-20 101.3 58 87.9
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 3.4e-20 100.9 58 87.9
Solyc04g056490.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 2.9e-19 97.8 58 86.2
Solyc04g056510.1 Solanum lycopersicum HOM05D003027 ORTHO05D003455 9.5e-15 82.8 57 73.7
PGSC0003DMG400044159 Solanum tuberosum HOM05D003027 ORTHO05D003455 9.5e-15 82.8 49 81.6
Solyc04g051060.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 2.6e-12 74.7 45 86.7
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 5.8e-12 73.6 54 75.9
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 1.3e-11 72.4 56 73.2
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.7e-11 72.0 56 71.4
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 4.9e-11 70.5 54 72.2
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 4.9e-11 70.5 56 71.4
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 6.4e-11 70.1 58 69.0
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 8.3e-11 69.7 55 70.9
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 8.3e-11 69.7 56 69.6
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 2.4e-10 68.2 53 71.7
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.4e-10 68.2 56 69.6
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 5.4e-10 67.0 55 63.6
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 7.1e-10 66.6 54 66.7
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 9.2e-10 66.2 54 66.7
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 1.2e-09 65.9 51 70.6
PGSC0003DMG400044241 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.2e-09 65.9 42 83.3
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 1.6e-09 65.5 55 70.9
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 2.1e-09 65.1 54 66.7
PGSC0003DMG400034669 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.1e-09 65.1 52 69.2
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 3.5e-09 64.3 58 63.8
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 3.5e-09 64.3 56 66.1
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.5e-09 64.3 52 69.2
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 4.6e-09 63.9 54 66.7
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 6.0e-09 63.5 54 66.7
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 6.0e-09 63.5 52 69.2
Dinv20757 Davidia involucrata HOM05D003027 ORTHO05D003455 1.0e-08 62.8 56 64.3
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 1.0e-08 62.8 58 62.1
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 1.3e-08 62.4 53 67.9
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.7e-08 62.0 52 67.3
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 2.3e-08 61.6 54 63.0
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 3.0e-08 61.2 53 64.2
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 3.0e-08 61.2 54 66.7
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 3.9e-08 60.8 52 67.3
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 3.9e-08 60.8 54 64.8
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 3.9e-08 60.8 56 64.3
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 5.1e-08 60.5 53 66.0
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 8.6e-08 59.7 53 67.9
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 8.6e-08 59.7 55 61.8
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 8.6e-08 59.7 52 65.4
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 1.1e-07 59.3 56 60.7
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 1.1e-07 59.3 53 67.9
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 1.9e-07 58.5 51 62.7
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 1.9e-07 58.5 59 62.7
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 1.9e-07 58.5 52 67.3
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 1.9e-07 58.5 56 58.9
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 2.5e-07 58.2 59 62.7
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 2.5e-07 58.2 61 57.4
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 5.6e-07 57.0 61 60.7
Os07g0644100 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 7.3e-07 56.6 54 59.3
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 7.3e-07 56.6 54 61.1
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 9.5e-07 56.2 54 61.1
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 9.5e-07 56.2 55 58.2
Zm00001eb110370 Zea mays HOM05D003027 ORTHO05D003455 9.5e-07 56.2 54 59.3
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 1.6e-06 55.5 51 62.7
BcaC07g37745 Brassica carinata HOM05D003027 ORTHO05D003455 2.1e-06 55.1 57 61.4
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 2.1e-06 55.1 57 61.4
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 2.1e-06 55.1 57 61.4
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 2.1e-06 55.1 58 60.3
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 2.1e-06 55.1 51 62.7
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 2.1e-06 55.1 57 61.4
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 2.1e-06 55.1 63 57.1
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 2.8e-06 54.7 56 60.7
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 2.8e-06 54.7 57 61.4
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 2.8e-06 54.7 57 61.4
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 2.8e-06 54.7 57 61.4
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 2.8e-06 54.7 57 61.4
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 2.8e-06 54.7 57 61.4
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 3.6e-06 54.3 57 61.4
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 3.6e-06 54.3 57 61.4
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 3.6e-06 54.3 53 64.2
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 3.6e-06 54.3 53 64.2
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 3.6e-06 54.3 51 62.7
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 3.6e-06 54.3 53 56.6
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 3.6e-06 54.3 51 62.7
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 3.6e-06 54.3 57 61.4
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 4.7e-06 53.9 51 64.7
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 4.7e-06 53.9 51 62.7
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 4.7e-06 53.9 51 64.7
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 4.7e-06 53.9 51 60.8
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 4.7e-06 53.9 51 60.8
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 4.7e-06 53.9 51 62.7
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 4.7e-06 53.9 52 61.5
Solyc03g013450.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 4.7e-06 53.9 37 78.4
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 6.2e-06 53.5 57 59.6
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 6.2e-06 53.5 49 65.3
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 6.2e-06 53.5 51 62.7
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 6.2e-06 53.5 51 62.7
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 8.1e-06 53.1 57 59.6
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 8.1e-06 53.1 57 59.6
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 8.1e-06 53.1 51 62.7


User provided reference genes

Program Settings