Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g050550.3 Solanum lycopersicum HOM05D007347 ORTHO05D009296 6.2e-170 601.7 589 100.0
Sopen04g021380 Solanum pennellii HOM05D007347 ORTHO05D009296 1.4e-166 590.5 589 98.3
CAN.G71.18 Capsicum annuum HOM05D007347 ORTHO05D009296 6.9e-137 491.9 584 90.1
Peaxi162Scf00004g02628 Petunia axillaris HOM05D007347 ORTHO05D009296 1.0e-127 461.5 571 87.6
Nitab4.5_0007154g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 1.4e-84 318.2 584 75.0
Migut.H00560 Erythranthe guttata HOM05D007347 ORTHO05D009296 1.4e-81 308.1 588 71.9
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 2.5e-78 297.4 584 73.5
SGA_v2.0_scaffold204G41666 Striga asiatica HOM05D007347 ORTHO05D009296 1.6e-77 294.7 585 70.8
MELO3C026797.2 Cucumis melo HOM05D007347 ORTHO05D009296 5.2e-76 289.7 576 70.7
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 8.3e-74 282.3 576 69.8
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 1.1e-73 282.0 581 73.5
MSTRG.24902 Avicennia marina HOM05D007347 ORTHO05D009296 7.3e-70 269.2 578 70.8
Sed0006376 Sechium edule HOM05D007347 ORTHO05D009296 1.2e-69 268.5 590 67.6
CSS0000287 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 4.7e-69 266.5 584 72.1
CSS0049471 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 4.7e-69 266.5 584 72.1
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 6.4e-66 256.1 184 66.8
Cc07_g04830 Coffea canephora HOM05D007347 ORTHO05D009296 2.7e-64 250.8 184 64.7
Eucgr.I02100 Eucalyptus grandis HOM05D007347 ORTHO05D009296 9.5e-62 242.3 587 69.2
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 3.6e-61 240.4 574 69.2
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 1.4e-60 238.4 184 63.6
Hma1.2p1_1364F.1_g278380 Hydrangea macrophylla HOM05D007347 ORTHO05D009296 4.4e-59 233.4 175 64.0
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 1.3e-58 231.9 182 65.4
Glyma.15G236300 Glycine max HOM05D007347 ORTHO05D009296 1.9e-57 228.0 576 68.4
SalBow1G8225 Salvia bowleyana HOM05D007347 ORTHO05D009296 1.9e-57 228.0 178 60.1
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 4.1e-57 226.9 188 60.1
CiPaw.03G007800 Carya illinoinensis HOM05D007347 ORTHO05D009296 2.1e-56 224.6 186 58.6
HanXRQChr14g0448021 Helianthus annuus HOM05D007347 ORTHO05D009296 4.6e-56 223.4 186 60.8
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 6.0e-56 223.0 187 61.0
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 3.0e-55 220.7 186 58.6
Haze_14081 Corylus avellana HOM05D007347 ORTHO05D009296 6.6e-55 219.5 178 62.4
TWI15G0869 Tripterygium wilfordii HOM05D007347 ORTHO05D009296 6.6e-55 219.5 184 58.2
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 2.5e-54 217.6 186 57.0
Ciclev10011342m.g Citrus clementina HOM05D007347 ORTHO05D009296 4.3e-54 216.9 184 58.7
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 4.3e-54 216.9 186 57.5
Cfa007995 Carpinus fangiana HOM05D007347 ORTHO05D009296 7.3e-54 216.1 179 62.0
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.6e-53 214.9 186 55.9
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.6e-53 214.9 186 55.9
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.6e-53 214.9 186 55.9
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 6.2e-53 213.0 186 59.1
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 8.1e-53 212.6 186 55.9
Atru.chr10.1870 Acer truncatum HOM05D007347 ORTHO05D009296 5.2e-52 209.9 588 67.9
Medtr8g039270 Medicago truncatula HOM05D007347 ORTHO05D009296 2.6e-51 207.6 177 52.5
Potri.017G108600 Populus trichocarpa HOM05D007347 ORTHO05D009296 2.6e-51 207.6 178 59.0
TPR.G30433 Trifolium pratense HOM05D007347 ORTHO05D009296 4.9e-50 203.4 174 54.6
Glyma.13G197700 Glycine max HOM05D007347 ORTHO05D009296 6.4e-50 203.0 176 57.4
GSVIVG01036486001 Vitis vinifera HOM05D007347 ORTHO05D009296 8.4e-50 202.6 174 56.3
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 1.1e-49 202.2 184 51.6
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 5.4e-49 199.9 183 54.6
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 5.4e-49 199.9 183 54.6
Sc10g0001490 Simmondsia chinensis HOM05D007347 ORTHO05D009296 9.2e-49 199.1 184 52.7
AUR62019500 Chenopodium quinoa HOM05D007347 ORTHO05D009296 6.0e-48 196.4 175 50.9
Sabra17G0091200 Salix brachista HOM05D007347 ORTHO05D009296 6.0e-48 196.4 175 56.6
CANSAT64G0714 Cannabis sativa HOM05D007347 ORTHO05D009296 3.0e-47 194.1 180 53.9
Gorai.005G232200 Gossypium raimondii HOM05D007347 ORTHO05D009296 3.0e-47 194.1 172 55.8
PSO782G5207 Papaver somniferum HOM05D007347 ORTHO05D009296 3.0e-47 194.1 182 53.3
Gohir.D02G204900 Gossypium hirsutum HOM05D007347 ORTHO05D009296 3.9e-47 193.7 173 55.5
Duzib138G0808 Durio zibethinus HOM05D007347 ORTHO05D009296 1.9e-46 191.4 175 54.9
VMungo1127G1072 Vigna mungo HOM05D007347 ORTHO05D009296 1.9e-46 191.4 168 56.0
Cpa.g.sc16.131 Carica papaya HOM05D007347 ORTHO05D009296 2.5e-46 191.0 171 55.6
Lalb_Chr19g0132391 Lupinus albus HOM05D007347 ORTHO05D009296 2.5e-46 191.0 176 52.8
Gohir.A03G183300 Gossypium hirsutum HOM05D007347 ORTHO05D009296 4.3e-46 190.3 172 55.2
MBI03_g44527_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 9.6e-46 189.1 180 49.4
BcaB06g27240 Brassica carinata HOM05D007347 ORTHO05D009296 1.3e-45 188.7 584 66.1
Phvul.011G207300 Phaseolus vulgaris HOM05D007347 ORTHO05D009296 2.1e-45 188.0 167 55.7
Aqoxy3G04330 Aquilegia oxysepala HOM05D007347 ORTHO05D009296 3.6e-45 187.2 174 52.9
Thecc.04G145700 Theobroma cacao HOM05D007347 ORTHO05D009296 3.6e-45 187.2 185 51.9
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 8.1e-45 186.0 175 53.7
COL.COLO4_23655 Corchorus olitorius HOM05D007347 ORTHO05D009296 4.0e-44 183.7 504 73.4
Manes.18G103700 Manihot esculenta HOM05D007347 ORTHO05D009296 1.5e-43 181.8 166 55.4
AL7G51690 Arabidopsis lyrata HOM05D007347 ORTHO05D009296 1.4e-41 175.3 190 49.5
Nn3g18549 Nelumbo nucifera HOM05D007347 ORTHO05D009296 1.4e-41 175.3 178 48.9
THA.LOC104805542 Tarenaya hassleriana HOM05D007347 ORTHO05D009296 1.4e-41 175.3 190 48.4
Thhalv10028323m.g Eutrema salsugineum HOM05D007347 ORTHO05D009296 3.2e-41 174.1 190 49.5
AT5G38730 Arabidopsis thaliana HOM05D007347 ORTHO05D009296 4.2e-41 173.7 191 50.3
Carub.0007s3713 Capsella rubella HOM05D007347 ORTHO05D009296 1.6e-40 171.8 190 47.9
SpUn0124_0020 Schrenkiella parvula HOM05D007347 ORTHO05D009296 2.1e-40 171.4 190 48.9
SpUn0185_0030 Schrenkiella parvula HOM05D007347 ORTHO05D009296 2.1e-40 171.4 190 48.9
Manes.02G063016 Manihot esculenta HOM05D002460 ORTHO05D002716 3.5e-40 170.6 167 52.7
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 1.3e-39 168.7 184 44.0
BraA04t16830Z Brassica rapa HOM05D007347 ORTHO05D009296 2.3e-39 167.9 187 46.0
FAN28G0832 Fragaria x ananassa HOM05D007347 ORTHO05D009296 5.1e-39 166.8 188 46.3
A04p11620 Brassica napus HOM05D007347 ORTHO05D009296 1.1e-38 165.6 187 45.5
BcaC02g09666 Brassica carinata HOM05D007347 ORTHO05D009296 2.5e-38 164.5 187 45.5
C04p45350 Brassica napus HOM05D007347 ORTHO05D009296 2.5e-38 164.5 187 45.5
BolC4t26117H Brassica oleracea HOM05D007347 ORTHO05D009296 2.5e-38 164.5 187 45.5
SHI25538 Sapria himalayana HOM05D002460 ORTHO05D002716 3.6e-37 160.6 168 52.4
Aa31LG9G16920 Aethionema arabicum HOM05D007347 ORTHO05D009296 6.2e-37 159.8 180 46.7
COL.COLO4_37044 Corchorus olitorius HOM05D007347 ORTHO05D009296 5.4e-33 146.7 130 52.3
SGA_v2.0_scaffold4G02364 Striga asiatica HOM05D007347 ORTHO05D009296 1.1e-30 139.0 135 50.4
ECA238G4434 Erigeron canadensis HOM05D007347 ORTHO05D009296 4.3e-30 137.1 104 64.4
AUR62036136 Chenopodium quinoa HOM05D007347 ORTHO05D009296 6.9e-28 129.8 104 58.7
MBI03_g13436_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 6.0e-24 116.7 100 54.0
CDE05G1387 Ceratophyllum demersum HOM05D007347 ORTHO05D009296 3.9e-23 114.0 131 43.5
Ca_23964_v3 Cicer arietinum L. HOM05D007347 ORTHO05D009296 2.1e-21 108.2 84 59.5
DCAR_010986 Daucus carota HOM05D007347 ORTHO05D009296 1.5e-19 102.1 91 47.3
CARHR264050 Cardamine hirsuta HOM05D007347 ORTHO05D009296 1.5e-14 85.5 69 56.5
Oeu033427.1 Olea europaea HOM05D007347 ORTHO05D009296 3.3e-14 84.3 69 58.0
MBI03_g44528_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 4.3e-14 84.0 142 35.9
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 1.1e-12 79.3 63 57.1
SGA_v2.0_scaffold204G41677 Striga asiatica HOM05D007347 ORTHO05D009296 4.5e-11 73.9 114 36.0
ATR0124G055 Amborella trichopoda HOM05D007347 ORTHO05D009296 1.4e-09 68.9 84 42.9
Zm00001eb259350 Zea mays HOM05D007347 ORTHO05D009296 3.2e-09 67.8 163 31.3
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 5.5e-09 67.0 171 27.5
AL7G26160 Arabidopsis lyrata HOM05D006931 ORTHO05D008782 7.2e-09 66.6 171 27.5
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 1.2e-08 65.9 171 27.5
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 1.6e-08 65.5 171 27.5
Migut.M00355 Erythranthe guttata HOM05D005973 ORTHO05D007285 1.6e-08 65.5 64 50.0
CARHR234290 Cardamine hirsuta HOM05D006931 ORTHO05D008782 6.1e-08 63.5 171 26.9
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 6.1e-08 63.5 171 26.3
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 1.0e-07 62.8 106 33.0
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 1.8e-07 62.0 171 25.1
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 1.8e-07 62.0 171 25.1
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 2.3e-07 61.6 171 25.1
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 3.0e-07 61.2 171 25.7
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 3.0e-07 61.2 165 28.5
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 5.1e-07 60.5 171 25.7
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 6.7e-07 60.1 165 28.5
Cpa.g.sc211.20 Carica papaya HOM05D006931 ORTHO05D008782 8.8e-07 59.7 165 26.1
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 1.1e-06 59.3 165 26.7
Nitab4.5_0000814g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 1.1e-06 59.3 33 78.8
A01p17940 Brassica napus HOM05D003050 ORTHO05D003513 1.5e-06 58.9 168 25.0
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 2.0e-06 58.5 141 27.7
BcaC09g52253 Brassica carinata HOM05D006931 ORTHO05D008782 2.5e-06 58.2 173 25.4
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 3.3e-06 57.8 171 28.1
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 4.3e-06 57.4 165 26.1
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 5.7e-06 57.0 165 27.3
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 5.7e-06 57.0 158 29.7
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 7.4e-06 56.6 150 27.3
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 7.4e-06 56.6 150 27.3
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 9.7e-06 56.2 165 25.5
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 9.7e-06 56.2 147 27.2


User provided reference genes

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