Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 6.6e-38 160.2 82 100.0
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.7e-17 92.4 54 83.3
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.7e-17 92.4 54 83.3
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 3.8e-17 91.3 54 83.3
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.1e-15 85.5 55 78.2
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.3e-14 82.8 54 74.1
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.3e-14 82.8 54 74.1
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.5e-13 79.3 54 70.4
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 3.3e-13 78.2 54 68.5
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 7.4e-13 77.0 54 66.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 2.8e-12 75.1 67 56.7
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.7e-12 74.7 54 66.7
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 6.2e-12 73.9 54 64.8
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 6.2e-12 73.9 54 64.8
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 8.2e-12 73.6 54 64.8
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.1e-11 73.2 54 63.0
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.4e-11 72.0 54 64.8
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.4e-11 72.0 54 64.8
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.3e-11 70.9 55 70.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 9.0e-11 70.1 76 51.3
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.2e-10 69.7 54 68.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.2e-10 69.7 54 63.0
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.2e-10 69.7 50 66.0
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 2.0e-10 68.9 54 68.5
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.4e-10 68.2 54 59.3
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 4.5e-10 67.8 57 66.7
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 5.8e-10 67.4 54 66.7
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.0e-09 66.6 54 63.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.0e-09 66.6 54 64.8
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.0e-09 66.6 54 64.8
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.0e-09 66.6 54 64.8
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.3e-09 66.2 54 64.8
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.3e-09 66.2 54 66.7
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.7e-09 65.9 54 63.0
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.7e-09 65.9 54 63.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 2.2e-09 65.5 54 61.1
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.9e-09 65.1 65 58.5
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.9e-09 65.1 60 63.3
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.8e-09 64.7 55 61.8
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 5.0e-09 64.3 54 61.1
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 6.5e-09 63.9 54 61.1
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 8.4e-09 63.5 54 61.1
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 8.4e-09 63.5 50 60.0
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 8.4e-09 63.5 54 61.1
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 8.4e-09 63.5 54 64.8
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 8.4e-09 63.5 54 61.1
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.1e-08 63.2 54 63.0
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.1e-08 63.2 54 61.1
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.1e-08 63.2 52 63.5
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.4e-08 62.8 54 59.3
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.4e-08 62.8 54 63.0
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.4e-08 62.8 54 63.0
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 1.4e-08 62.8 54 61.1
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.4e-08 62.8 54 57.4
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.9e-08 62.4 52 63.5
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.9e-08 62.4 54 55.6
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.9e-08 62.4 54 59.3
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.9e-08 62.4 54 59.3
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.9e-08 62.4 54 59.3
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.9e-08 62.4 54 59.3
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.9e-08 62.4 48 66.7
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.9e-08 62.4 52 61.5
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 3.2e-08 61.6 52 61.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 3.2e-08 61.6 52 61.5
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 3.2e-08 61.6 44 70.5
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 3.2e-08 61.6 44 70.5
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.2e-08 61.6 53 58.5
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 4.2e-08 61.2 54 61.1
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 4.2e-08 61.2 52 59.6
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 7.1e-08 60.5 49 61.2
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.1e-08 60.5 54 57.4
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 7.1e-08 60.5 54 57.4
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 9.3e-08 60.1 52 61.5
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 9.3e-08 60.1 44 70.5
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 9.3e-08 60.1 57 56.1
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 9.3e-08 60.1 54 61.1
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.2e-07 59.7 52 61.5
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.2e-07 59.7 52 59.6
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.2e-07 59.7 52 61.5
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.2e-07 59.7 54 57.4
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.6e-07 59.3 52 59.6
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.6e-07 59.3 57 56.1
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.1e-07 58.9 32 78.1
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 2.1e-07 58.9 52 53.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 2.1e-07 58.9 54 57.4
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.7e-07 58.5 54 59.3
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 3.5e-07 58.2 52 59.6
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 3.5e-07 58.2 52 59.6
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 3.5e-07 58.2 52 59.6
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 3.5e-07 58.2 52 59.6
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 3.5e-07 58.2 52 59.6
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.5e-07 58.2 52 59.6
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.5e-07 58.2 53 56.6
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 3.5e-07 58.2 54 57.4
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 4.6e-07 57.8 54 51.9
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 4.6e-07 57.8 47 63.8
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 4.6e-07 57.8 52 57.7
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.6e-07 57.8 52 57.7
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 4.6e-07 57.8 78 42.3
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.1e-07 57.4 65 55.4
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 6.1e-07 57.4 54 55.6
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.0e-06 56.6 55 58.2
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.0e-06 56.6 55 58.2
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.0e-06 56.6 47 59.6
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.0e-06 56.6 47 59.6
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.0e-06 56.6 44 65.9
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.0e-06 56.6 44 65.9
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.3e-06 56.2 52 55.8
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.3e-06 55.5 52 55.8
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.3e-06 55.5 52 57.7
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 2.3e-06 55.5 52 57.7
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 3.0e-06 55.1 46 60.9
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 3.0e-06 55.1 52 55.8
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 3.0e-06 55.1 47 55.3
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 3.9e-06 54.7 51 56.9
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 5.1e-06 54.3 47 57.4
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.1e-06 54.3 53 52.8
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 5.1e-06 54.3 49 53.1


User provided reference genes

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