Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g039830.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 3.8e-106 388.3 209 100.0
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.8e-71 273.1 301 56.1
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 4.1e-60 235.3 318 49.4
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 3.5e-59 232.3 330 47.9
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 8.3e-53 211.1 319 47.6
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 2.6e-46 189.5 215 54.4
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 2.1e-40 169.9 319 41.4
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 1.3e-37 160.6 265 45.3
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 3.8e-37 159.1 303 41.9
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 3.8e-37 159.1 303 41.9
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 3.8e-37 159.1 303 41.9
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 3.8e-37 159.1 303 41.9
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 3.8e-37 159.1 303 41.9
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 2.1e-35 153.3 313 39.9
Solyc09g091410.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 8.1e-32 141.4 101 75.2
CAN.G1012.4 Capsicum annuum HOM05D000806 ORTHO05D002320 3.1e-31 139.4 196 49.0
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 5.3e-31 138.7 303 37.6
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 1.2e-30 137.5 307 37.1
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.4e-30 136.0 311 37.9
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 7.6e-30 134.8 253 38.7
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 2.2e-29 133.3 305 39.7
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 2.9e-29 132.9 297 38.4
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 6.4e-29 131.7 311 34.7
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 8.4e-29 131.3 271 37.6
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.1e-28 131.0 282 39.4
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 2.4e-28 129.8 309 40.1
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 9.3e-28 127.9 285 39.3
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 2.1e-27 126.7 280 38.6
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 6.0e-27 125.2 270 38.5
Solyc01g017200.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.0e-26 124.4 110 68.2
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.3e-26 123.2 311 37.0
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.9e-26 122.5 214 43.9
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 8.7e-26 121.3 304 34.9
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 2.5e-25 119.8 297 36.7
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 3.7e-24 115.9 241 38.2
CSS0050017 Camellia sinensis var. sinensis HOM05D000806 ORTHO05D002320 1.1e-23 114.4 227 38.8
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 3.1e-23 112.8 314 37.3
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.1e-23 112.8 314 37.3
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 9.0e-23 111.3 292 34.2
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-22 110.9 167 47.9
HanXRQChr08g0210341 Helianthus annuus HOM05D000806 ORTHO05D002320 1.0e-21 107.8 221 40.3
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.9e-21 105.5 314 36.3
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.9e-21 105.5 314 36.3
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 8.4e-21 104.8 186 40.3
HanXRQChr13g0413531 Helianthus annuus HOM05D000806 ORTHO05D002320 7.1e-20 101.7 168 42.9
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 7.1e-20 101.7 296 34.5
Nitab4.5_0009663g0050 Nicotiana tabacum HOM05D000806 ORTHO05D002320 1.3e-18 97.4 121 49.6
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.3e-18 96.7 204 39.2
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.6e-16 90.5 293 31.1
Gorai.003G066100 Gossypium raimondii HOM05D000806 ORTHO05D002320 4.8e-16 89.0 201 38.3
Migut.D01360 Erythranthe guttata HOM05D000806 ORTHO05D002320 6.2e-16 88.6 220 37.3
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 8.2e-16 88.2 292 28.8
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 8.2e-16 88.2 292 28.8
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 1.1e-15 87.8 292 29.1
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 1.4e-15 87.4 292 31.5
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 1.8e-15 87.0 171 39.2
Hma1.2p1_0242F.1_g100626 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 4.0e-15 85.9 163 39.9
Hma1.2p1_0355F.1_g133923 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 4.0e-15 85.9 163 39.9
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 6.9e-15 85.1 294 28.9
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 9.0e-15 84.7 222 34.2
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 2.0e-14 83.6 296 29.1
EL10As15g24118 Beta vulgaris HOM05D001133 ORTHO05D000941 7.6e-14 81.6 228 35.5
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 1.0e-13 81.3 294 28.6
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 1.0e-13 81.3 294 28.6
Gorai.001G206400 Gossypium raimondii HOM05D001133 ORTHO05D000941 2.9e-13 79.7 128 40.6
MELO3C000334.2 Cucumis melo HOM05D000806 ORTHO05D002320 8.4e-13 78.2 168 36.9
HanXRQChr10g0318221 Helianthus annuus HOM05D000806 ORTHO05D002320 8.4e-13 78.2 51 78.4
Peaxi162Scf01064g00230 Petunia axillaris HOM05D000806 ORTHO05D002320 1.4e-12 77.4 51 78.4
CAN.G1.10 Capsicum annuum HOM05D000806 ORTHO05D002320 1.9e-12 77.0 126 44.4
Sopen04g010000 Solanum pennellii HOM05D000806 ORTHO05D002320 1.9e-12 77.0 57 73.7
Gohir.A07G163645 Gossypium hirsutum HOM05D001133 ORTHO05D000941 3.2e-12 76.3 120 39.2
CAN.G1007.1 Capsicum annuum HOM05D000806 ORTHO05D002320 5.5e-12 75.5 49 79.6
CAN.G445.6 Capsicum annuum HOM05D000806 ORTHO05D002320 5.5e-12 75.5 49 79.6
Nitab4.5_0003644g0070 Nicotiana tabacum HOM05D000806 ORTHO05D002320 5.5e-12 75.5 49 79.6
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 5.5e-12 75.5 51 74.5
Sopen07g002120 Solanum pennellii HOM05D000806 ORTHO05D002320 5.5e-12 75.5 49 79.6
Peaxi162Scf00937g00111 Petunia axillaris HOM05D000806 ORTHO05D002320 7.1e-12 75.1 51 76.5
CAN.G1693.6 Capsicum annuum HOM05D000806 ORTHO05D002320 1.6e-11 73.9 49 77.6
Lsat_1_v5_gn_4_102681 Lactuca sativa HOM05D000806 ORTHO05D002320 2.1e-11 73.6 104 50.0
Nitab4.5_0009663g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002320 2.1e-11 73.6 51 76.5
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 2.1e-11 73.6 49 75.5
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 2.7e-11 73.2 53 71.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 3.5e-11 72.8 46 80.4
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 3.5e-11 72.8 46 80.4
arahy.Tifrunner.gnm1.ann1.15M9SP Arachis hypogaea HOM05D000806 ORTHO05D002320 1.0e-10 71.2 51 72.5
Lsat_1_v5_gn_2_70561 Lactuca sativa HOM05D000806 ORTHO05D002320 1.3e-10 70.9 61 62.3
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 1.8e-10 70.5 155 36.1
CAN.G1012.3 Capsicum annuum HOM05D000806 ORTHO05D002320 2.3e-10 70.1 51 70.6
Lalb_Chr23g0274531 Lupinus albus HOM05D000806 ORTHO05D002320 2.3e-10 70.1 50 74.0
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 2.3e-10 70.1 156 36.5
TPR.G16839 Trifolium pratense HOM05D000806 ORTHO05D002320 3.0e-10 69.7 49 69.4
MD02G1049400 Malus domestica HOM05D000806 ORTHO05D002320 5.1e-10 68.9 49 71.4
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 6.7e-10 68.6 51 72.5
Lalb_Chr10g0102281 Lupinus albus HOM05D000806 ORTHO05D002320 1.5e-09 67.4 70 60.0
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.5e-09 66.6 49 71.4
AUR62041919 Chenopodium quinoa HOM05D000806 ORTHO05D002324 2.5e-09 66.6 49 71.4
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 4.3e-09 65.9 43 72.1
Medtr4g050863 Medicago truncatula HOM05D062263 ORTHO05D002320 4.3e-09 65.9 131 38.2
Oeu012807.1 Olea europaea HOM05D000806 ORTHO05D002320 5.7e-09 65.5 50 66.0
Sc23g0003920 Simmondsia chinensis HOM05D000806 ORTHO05D002320 5.7e-09 65.5 49 69.4
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 7.4e-09 65.1 38 78.9
AUR62006476 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.3e-08 64.3 36 83.3
AUR62032522 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.3e-08 64.3 36 83.3
AUR62042261 Chenopodium quinoa HOM05D000806 ORTHO05D002324 1.3e-08 64.3 36 83.3
Lsat_1_v5_gn_7_98301 Lactuca sativa HOM05D000806 ORTHO05D002320 1.3e-08 64.3 49 67.3
BcaC04g21638 Brassica carinata HOM05D000806 ORTHO05D002320 1.6e-08 63.9 48 64.6
C02p43520 Brassica napus HOM05D000806 ORTHO05D002320 1.6e-08 63.9 48 64.6
C09p29580 Brassica napus HOM05D000806 ORTHO05D002320 1.6e-08 63.9 48 64.6
BraSC59t46593Z Brassica rapa HOM05D000806 ORTHO05D002320 1.6e-08 63.9 48 64.6
Nitab4.5_0000342g0250 Nicotiana tabacum HOM05D000806 ORTHO05D002320 1.6e-08 63.9 43 74.4
arahy.Tifrunner.gnm1.ann1.6V23H5 Arachis hypogaea HOM05D000806 ORTHO05D002320 2.2e-08 63.5 36 80.6
BNapus_Darmor_BZH_scaffold_287p00130 Brassica napus HOM05D000806 ORTHO05D002320 2.8e-08 63.2 44 68.2
MD02G1049600 Malus domestica HOM05D001133 ORTHO05D000941 2.8e-08 63.2 92 44.6
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 2.8e-08 63.2 49 69.4
AUR62023874 Chenopodium quinoa HOM05D000806 ORTHO05D002324 3.7e-08 62.8 36 80.6
Lj2A1237T126 Lonicera japonica HOM05D000806 ORTHO05D002320 3.7e-08 62.8 51 58.8
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 3.7e-08 62.8 51 58.8
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 4.8e-08 62.4 40 72.5
AUR62028418 Chenopodium quinoa HOM05D000806 ORTHO05D002324 8.2e-08 61.6 36 80.6
Nn265s45953 Nelumbo nucifera HOM05D000806 ORTHO05D002320 8.2e-08 61.6 36 83.3
CDE02G1301 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.1e-07 61.2 45 71.1
MD11G1294900 Malus domestica HOM05D001133 ORTHO05D000941 1.1e-07 61.2 79 46.8
CAN.G398.12 Capsicum annuum HOM05D001133 ORTHO05D000941 1.4e-07 60.8 63 57.1
Lsat_1_v5_gn_7_98321 Lactuca sativa HOM05D000806 ORTHO05D002320 1.8e-07 60.5 138 38.4
BolSC29t60587H Brassica oleracea HOM05D000806 ORTHO05D002320 2.4e-07 60.1 48 62.5
BolSC35t60644H Brassica oleracea HOM05D000806 ORTHO05D002320 2.4e-07 60.1 48 62.5
BolSC35t60752H Brassica oleracea HOM05D000806 ORTHO05D002320 2.4e-07 60.1 48 62.5
BolSC49t61185H Brassica oleracea HOM05D000806 ORTHO05D002320 4.1e-07 59.3 44 65.9
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 4.1e-07 59.3 35 80.0
VMungo0251G1963 Vigna mungo HOM05D000806 ORTHO05D010715 4.1e-07 59.3 46 67.4
CAN.G88.2 Capsicum annuum HOM05D000806 ORTHO05D002320 5.3e-07 58.9 48 66.7
MD02G1049500 Malus domestica HOM05D000806 ORTHO05D002320 6.9e-07 58.5 92 44.6
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 6.9e-07 58.5 49 67.3
BraSC25t45846Z Brassica rapa HOM05D000806 ORTHO05D002320 1.5e-06 57.4 40 67.5
CAN.G212.7 Capsicum annuum HOM05D000680 ORTHO05D002320 1.5e-06 57.4 176 33.5
Lj1P303T21 Lonicera japonica HOM05D000806 ORTHO05D002320 2.0e-06 57.0 43 60.5
MELO3C028653.2 Cucumis melo HOM05D000806 ORTHO05D002320 3.4e-06 56.2 151 33.8
arahy.Tifrunner.gnm1.ann1.HP88CG Arachis hypogaea HOM05D000806 ORTHO05D002320 5.9e-06 55.5 97 40.2
Glyma.15G248500 Glycine max HOM05D000806 ORTHO05D002320 7.7e-06 55.1 103 36.9
MD11G1294800 Malus domestica HOM05D000806 ORTHO05D002320 1.0e-05 54.7 87 41.4
Medtr3g080300 Medicago truncatula HOM05D000806 ORTHO05D002320 1.0e-05 54.7 35 71.4


User provided reference genes

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