Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g026220.4 Solanum lycopersicum HOM05D001292 ORTHO05D001202 1.1e-30 136.0 65 100.0
Sopen04g014280 Solanum pennellii HOM05D001292 ORTHO05D001202 1.1e-30 136.0 65 100.0
Solyc04g026200.3 Solanum lycopersicum HOM05D001292 ORTHO05D001202 3.4e-21 104.4 59 84.7
CAN.G60.9 Capsicum annuum HOM05D001292 ORTHO05D001202 5.8e-21 103.6 54 92.6
Sopen04g014190 Solanum pennellii HOM05D001292 ORTHO05D001202 7.6e-21 103.2 59 83.1
Nitab4.5_0000034g0270 Nicotiana tabacum HOM05D001292 ORTHO05D001202 2.7e-18 94.7 48 93.8
Nitab4.5_0004636g0020 Nicotiana tabacum HOM05D001292 ORTHO05D001202 3.0e-17 91.3 48 91.7
Peaxi162Scf00338g00116 Petunia axillaris HOM05D001292 ORTHO05D001202 2.5e-16 88.2 58 75.9
Nitab4.5_0002579g0090 Nicotiana tabacum HOM05D001292 ORTHO05D001202 6.3e-15 83.6 56 76.8
Sopen05g001630 Solanum pennellii HOM05D001292 ORTHO05D001202 5.3e-14 80.5 56 73.2
Actinidia13513 Actinidia chinensis HOM05D001292 ORTHO05D001202 3.4e-13 77.8 61 63.9
Dinv24863 Davidia involucrata HOM05D001292 ORTHO05D001202 1.3e-12 75.9 58 67.2
Nitab4.5_0000113g0260 Nicotiana tabacum HOM05D001292 ORTHO05D001202 1.3e-12 75.9 49 79.6
Rhsim12G0121000 Rhododendron simsii HOM05D001292 ORTHO05D001202 1.7e-12 75.5 56 66.1
CAN.G376.11 Capsicum annuum HOM05D001292 ORTHO05D001202 2.9e-12 74.7 54 72.2
Oeu056395.2 Olea europaea HOM05D001292 ORTHO05D001202 3.8e-12 74.3 61 57.4
Dinv15305 Davidia involucrata HOM05D001292 ORTHO05D001202 5.0e-12 73.9 57 70.2
Glyma.08G287800 Glycine max HOM05D001292 ORTHO05D001202 6.5e-12 73.6 63 60.3
Ca_22729_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 1.4e-11 72.4 54 66.7
vmacro16254 Vaccinium macrocarpon HOM05D001292 ORTHO05D001202 1.9e-11 72.0 57 66.7
Psat4g125280 Pisum sativum HOM05D001292 ORTHO05D001202 2.5e-11 71.6 54 66.7
SGA_v2.0_scaffold165G38250 Striga asiatica HOM05D001292 ORTHO05D001202 2.5e-11 71.6 69 55.1
Lj4g0026951 Lotus japonicus HOM05D001292 ORTHO05D001202 3.2e-11 71.2 55 63.6
Solyc05g005630.4 Solanum lycopersicum HOM05D001292 ORTHO05D001202 3.2e-11 71.2 75 56.0
CSS0024382 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 4.2e-11 70.9 61 60.7
DCAR_007092 Daucus carota HOM05D001292 ORTHO05D001202 4.2e-11 70.9 56 64.3
HanXRQChr12g0368581 Helianthus annuus HOM05D001292 ORTHO05D001202 9.3e-11 69.7 54 63.0
unitig_26.g10341 Utricularia gibba HOM05D001292 ORTHO05D001202 9.3e-11 69.7 66 53.0
Lalb_Chr09g0335011 Lupinus albus HOM05D001292 ORTHO05D001202 1.2e-10 69.3 56 58.9
Migut.L01409 Erythranthe guttata HOM05D001292 ORTHO05D001202 1.6e-10 68.9 66 56.1
arahy.Tifrunner.gnm1.ann1.UYF69H Arachis hypogaea HOM05D001292 ORTHO05D001202 2.7e-10 68.2 56 60.7
PSO063G4088 Papaver somniferum HOM05D001292 ORTHO05D001202 2.7e-10 68.2 57 64.9
PSO832G2131 Papaver somniferum HOM05D001292 ORTHO05D001202 2.7e-10 68.2 57 64.9
TAR374G1183 Trochodendron aralioides HOM05D001292 ORTHO05D001202 2.7e-10 68.2 56 62.5
Medtr8g064470 Medicago truncatula HOM05D001292 ORTHO05D001202 3.5e-10 67.8 54 64.8
Thecc.02G248100 Theobroma cacao HOM05D001292 ORTHO05D001202 3.5e-10 67.8 56 60.7
TPR.G32100 Trifolium pratense HOM05D001292 ORTHO05D001202 4.6e-10 67.4 54 63.0
Duzib248G1000 Durio zibethinus HOM05D001292 ORTHO05D001202 7.9e-10 66.6 56 58.9
arahy.Tifrunner.gnm1.ann1.XAFC77 Arachis hypogaea HOM05D001292 ORTHO05D001202 1.0e-09 66.2 56 58.9
Glyma.18G137700 Glycine max HOM05D001292 ORTHO05D001202 1.0e-09 66.2 53 62.3
QL03p061415 Quercus lobata HOM05D001292 ORTHO05D001202 1.0e-09 66.2 58 60.3
MSTRG.7894 Avicennia marina HOM05D001292 ORTHO05D001202 1.3e-09 65.9 61 55.7
CiPaw.05G150600 Carya illinoinensis HOM05D001292 ORTHO05D001202 2.3e-09 65.1 56 57.1
Cfa009140 Carpinus fangiana HOM05D001292 ORTHO05D001202 3.0e-09 64.7 56 55.4
Cc11_g14630 Coffea canephora HOM05D001292 ORTHO05D001202 3.0e-09 64.7 57 57.9
CsaV3_5G031600 Cucumis sativus L. HOM05D001292 ORTHO05D001202 3.0e-09 64.7 54 61.1
Phvul.003G052200 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 3.0e-09 64.7 53 62.3
MSTRG.597 Avicennia marina HOM05D001292 ORTHO05D001202 3.9e-09 64.3 61 55.7
VMungo0251G2116 Vigna mungo HOM05D001292 ORTHO05D001202 3.9e-09 64.3 53 62.3
Aqoxy3G02988 Aquilegia oxysepala HOM05D001292 ORTHO05D001202 5.1e-09 63.9 54 57.4
Lsat_1_v5_gn_8_157321 Lactuca sativa HOM05D001292 ORTHO05D001202 5.1e-09 63.9 55 58.2
Nn4g22805 Nelumbo nucifera HOM05D001292 ORTHO05D001202 5.1e-09 63.9 56 58.9
MBI16_g36056_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 6.7e-09 63.5 56 58.9
Sed0021630 Sechium edule HOM05D001292 ORTHO05D001202 6.7e-09 63.5 51 62.7
Sc11g0001210 Simmondsia chinensis HOM05D001292 ORTHO05D001202 1.1e-08 62.8 58 60.3
Gohir.A04G135200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.5e-08 62.4 56 57.1
Gohir.D04G178300 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.5e-08 62.4 56 57.1
Gorai.012G171400 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.5e-08 62.4 56 57.1
ATR0730G146 Amborella trichopoda HOM05D001292 ORTHO05D001202 1.9e-08 62.0 52 61.5
Eucgr.H02612 Eucalyptus grandis HOM05D001292 ORTHO05D001202 1.9e-08 62.0 51 56.9
TWI18G1467 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 1.9e-08 62.0 54 59.3
Cpa.g.sc69.25 Carica papaya HOM05D001292 ORTHO05D001202 2.5e-08 61.6 56 55.4
Atru.chr11.2015 Acer truncatum HOM05D001292 ORTHO05D001202 4.3e-08 60.8 54 61.1
A02p26910 Brassica napus HOM05D015699 ORTHO05D013665 4.3e-08 60.8 56 51.8
CDE04G1081 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 4.3e-08 60.8 51 56.9
Potri.010G040600 Populus trichocarpa HOM05D001292 ORTHO05D001202 4.3e-08 60.8 56 53.6
SEGI_02443 Sequoiadendron giganteum HOM05D001292 ORTHO05D001202 4.3e-08 60.8 60 51.7
Manes.13G030900 Manihot esculenta HOM05D001292 ORTHO05D001202 7.4e-08 60.1 63 50.8
Haze_12172 Corylus avellana HOM05D001292 ORTHO05D001202 9.7e-08 59.7 56 51.8
Lsat_1_v5_gn_3_48100 Lactuca sativa HOM05D001292 ORTHO05D001202 9.7e-08 59.7 56 55.4
PGR119G2170 Punica granatum HOM05D001292 ORTHO05D001202 9.7e-08 59.7 57 50.9
Manes.12G029500 Manihot esculenta HOM05D001292 ORTHO05D001202 1.3e-07 59.3 53 56.6
CDE06G2008 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 1.6e-07 58.9 52 55.8
CANSAT01G2663 Cannabis sativa HOM05D001292 ORTHO05D001202 2.2e-07 58.5 55 50.9
Ciclev10031081m.g Citrus clementina HOM05D001292 ORTHO05D001202 2.2e-07 58.5 51 60.8
SEGI_12549 Sequoiadendron giganteum HOM05D001292 ORTHO05D001202 2.8e-07 58.2 54 55.6
THA.LOC104823662 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 2.8e-07 58.2 55 50.9
HPP92_008297 Vanilla planifolia HOM05D001292 ORTHO05D001202 3.7e-07 57.8 54 55.6
ECA246G0922 Erigeron canadensis HOM05D001292 ORTHO05D001202 4.8e-07 57.4 47 63.8
A09p17630 Brassica napus HOM05D001292 ORTHO05D001202 6.3e-07 57.0 55 50.9
C09p21960 Brassica napus HOM05D001292 ORTHO05D001202 6.3e-07 57.0 55 50.9
BcaC04g22220 Brassica carinata HOM05D001292 ORTHO05D001202 8.2e-07 56.6 53 52.8
Os12g0606900 Oryza sativa ssp. japonica HOM05D001292 ORTHO05D001202 8.2e-07 56.6 54 48.1
Aa31LG2G10100 Aethionema arabicum HOM05D001292 ORTHO05D001202 1.1e-06 56.2 57 54.4
FvH4_4g34560 Fragaria vesca HOM05D001292 ORTHO05D001202 1.1e-06 56.2 53 50.9
FAN07G2035 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.1e-06 56.2 53 50.9
FAN17G1642 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.1e-06 56.2 53 50.9
RcHm_v2.0_Chr4g0443941 Rosa chinensis HOM05D001292 ORTHO05D001202 1.1e-06 56.2 53 50.9
ECA233G2320 Erigeron canadensis HOM05D001292 ORTHO05D001202 1.4e-06 55.8 49 57.1
HanXRQChr15g0490121 Helianthus annuus HOM05D001292 ORTHO05D001202 1.4e-06 55.8 56 53.6
AagrBONN_evm.TU.Sc2ySwM_228.281 Anthoceros agrestis HOM05D001292 ORTHO05D001202 1.8e-06 55.5 53 47.2
EL10Ac6g13669 Beta vulgaris HOM05D001292 ORTHO05D001202 2.4e-06 55.1 56 50.0
BolC9t55101H Brassica oleracea HOM05D001292 ORTHO05D001202 3.1e-06 54.7 55 49.1
BraA09t37393Z Brassica rapa HOM05D001292 ORTHO05D001202 3.1e-06 54.7 55 49.1
Sp2g04460 Schrenkiella parvula HOM05D001292 ORTHO05D001202 3.1e-06 54.7 57 47.4
SpUn0106_0010 Schrenkiella parvula HOM05D001292 ORTHO05D001202 3.1e-06 54.7 57 47.4
BcaB07g31205 Brassica carinata HOM05D001292 ORTHO05D001202 4.1e-06 54.3 54 48.1
Carub.0002s0503 Capsella rubella HOM05D001292 ORTHO05D001202 4.1e-06 54.3 56 48.2
AagrBONN_evm.TU.Sc2ySwM_228.75 Anthoceros agrestis HOM05D001292 ORTHO05D001202 5.3e-06 53.9 53 45.3
AT1G60220 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 6.9e-06 53.5 56 46.4
A02p26940 Brassica napus HOM05D001292 ORTHO05D001202 6.9e-06 53.5 51 49.0
BraA02t07707Z Brassica rapa HOM05D001292 ORTHO05D001202 6.9e-06 53.5 51 49.0
AL2G16440 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 9.0e-06 53.1 56 46.4
AUR62005372 Chenopodium quinoa HOM05D001292 ORTHO05D001202 9.0e-06 53.1 51 52.9
Thhalv10023376m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 9.0e-06 53.1 56 46.4
PGR031G1992 Punica granatum HOM05D001292 ORTHO05D001202 9.0e-06 53.1 54 40.7


User provided reference genes

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