Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 5.5e-84 314.3 163 100.0
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.4e-79 299.7 157 99.4
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 5.3e-79 297.7 157 98.7
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.2e-78 296.6 155 98.7
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.5e-78 296.2 178 88.8
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 2.5e-76 288.9 155 96.1
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.2e-76 288.5 157 93.6
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 3.2e-76 288.5 157 93.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 7.1e-76 287.3 157 92.4
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 7.1e-76 287.3 157 93.0
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 7.1e-76 287.3 157 93.0
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 2.1e-75 285.8 157 92.4
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.7e-75 285.4 157 91.7
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.5e-75 285.0 157 91.7
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 3.5e-75 285.0 157 91.7
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 4.6e-75 284.6 154 92.2
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 4.6e-75 284.6 157 91.7
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 7.9e-75 283.9 157 91.7
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.0e-74 283.5 157 93.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.3e-74 283.1 157 92.4
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-74 283.1 157 92.4
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-74 283.1 157 92.4
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.3e-74 283.1 157 91.7
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.3e-74 283.1 157 91.7
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.3e-74 283.1 157 92.4
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.8e-74 282.7 155 93.5
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 3.9e-74 281.6 155 91.0
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 5.1e-74 281.2 157 91.1
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.5e-73 279.6 157 90.4
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.9e-73 279.3 157 89.2
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.9e-73 279.3 157 90.4
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.9e-73 279.3 157 91.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.9e-73 279.3 156 90.4
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 2.5e-73 278.9 157 91.1
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.5e-73 278.9 157 89.8
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.3e-73 278.5 157 89.8
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 5.7e-73 277.7 157 89.8
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 5.7e-73 277.7 157 89.8
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 5.7e-73 277.7 157 90.4
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 5.7e-73 277.7 157 90.4
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 5.7e-73 277.7 157 90.4
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 5.7e-73 277.7 157 89.8
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 5.7e-73 277.7 157 89.8
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 7.4e-73 277.3 157 88.5
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.4e-73 277.3 156 89.1
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 9.7e-73 276.9 157 89.2
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.6e-72 276.2 157 89.2
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.6e-72 276.2 157 89.2
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.6e-72 276.2 157 89.2
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.6e-72 276.2 157 91.1
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 2.2e-72 275.8 157 89.8
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 2.2e-72 275.8 157 89.2
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 2.8e-72 275.4 157 89.2
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.7e-72 275.0 156 89.7
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 4.8e-72 274.6 155 90.3
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 4.8e-72 274.6 157 89.8
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 4.8e-72 274.6 157 88.5
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 8.2e-72 273.9 157 87.3
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.1e-71 273.5 157 88.5
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.8e-71 272.7 157 88.5
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.8e-71 272.7 157 88.5
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.4e-71 272.3 155 87.7
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 2.4e-71 272.3 157 89.2
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 5.3e-71 271.2 157 87.3
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 6.9e-71 270.8 157 87.3
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.2e-70 270.0 157 87.3
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 2.6e-70 268.9 157 86.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.6e-70 268.9 157 87.9
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 3.4e-70 268.5 155 88.4
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 4.5e-70 268.1 157 86.6
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 7.7e-70 267.3 157 86.6
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.7e-70 267.3 157 86.0
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.9e-69 265.4 187 76.5
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.9e-68 262.7 158 85.4
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 2.5e-68 262.3 182 76.9
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.5e-68 262.3 157 84.7
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 5.5e-68 261.2 154 85.1
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 7.2e-68 260.8 153 85.6
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 7.2e-68 260.8 164 82.3
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.4e-68 260.4 155 82.6
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.6e-67 259.6 158 82.9
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 4.6e-67 258.1 159 83.6
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 7.9e-67 257.3 158 83.5
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 3.9e-66 255.0 159 81.8
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 5.1e-66 254.6 154 85.1
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 6.7e-66 254.2 155 83.2
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 6.7e-66 254.2 154 81.8
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 8.8e-66 253.8 159 82.4
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.1e-65 253.4 158 82.3
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.5e-65 253.1 159 81.8
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.0e-65 252.7 156 79.5
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.5e-65 252.3 159 81.1
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 3.3e-65 251.9 158 82.3
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 5.7e-65 251.1 159 80.5
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 9.7e-65 250.4 158 81.6
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.3e-64 250.0 159 81.1
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.3e-64 250.0 158 81.0
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.7e-64 249.6 157 80.9
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.7e-64 249.6 154 80.5
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.2e-64 249.2 133 98.5
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.8e-64 248.8 156 80.8
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 8.2e-64 247.3 161 80.1
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.2e-64 247.3 156 78.8
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 8.2e-64 247.3 154 77.9
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.1e-63 246.9 158 81.0
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.8e-63 246.1 152 83.6
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 5.3e-63 244.6 157 79.6
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 3.4e-62 241.9 157 81.5
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.4e-60 236.5 141 83.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-59 233.4 145 81.4
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 2.6e-57 225.7 155 72.9
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.2e-56 222.6 125 88.0
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 4.8e-56 221.5 156 73.7
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 9.1e-55 217.2 124 87.1
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 9.1e-55 217.2 138 79.0
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 5.9e-54 214.5 126 85.7
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.1e-52 210.3 125 82.4
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 4.2e-52 208.4 136 78.7
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 4.2e-52 208.4 136 78.7
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 9.4e-52 207.2 157 72.6
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 2.0e-49 199.5 161 62.7
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 9.7e-49 197.2 132 81.1
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.7e-48 196.4 128 78.1
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.7e-48 196.4 159 66.0
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 6.3e-48 194.5 157 66.9
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 6.3e-48 194.5 157 66.9
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.8e-47 193.0 157 66.9
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.0e-45 187.2 149 65.1
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.2e-44 182.2 107 82.2
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.4e-42 176.8 99 91.9
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 4.0e-42 175.3 100 87.0
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 3.4e-41 172.2 178 56.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 5.7e-41 171.4 109 76.1
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 5.7e-41 171.4 117 73.5
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.7e-40 168.7 187 55.1
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.1e-39 167.2 107 78.5
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.0e-37 160.6 98 80.6
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 2.3e-34 149.4 111 64.9
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.3e-32 143.7 115 67.8
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.3e-32 143.7 151 53.0
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 2.0e-25 119.8 156 49.4
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.2e-22 110.5 68 85.3
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 1.1e-20 104.0 56 96.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.9e-20 103.2 58 89.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 7.3e-20 101.3 192 38.0
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.8e-18 94.7 51 90.2
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.0e-13 80.9 49 79.6
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.1e-12 77.4 54 66.7
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-10 70.5 121 38.0
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 3.1e-10 69.3 171 31.6


User provided reference genes

Program Settings