Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 9.3e-194 680.2 402 100.0
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 2.2e-190 669.1 402 98.8
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 4.8e-174 614.8 402 86.3
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.0e-171 607.1 403 85.6
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.4e-165 586.6 403 83.9
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.0e-163 580.5 403 84.6
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 3.8e-163 578.6 403 87.8
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.1e-161 572.8 401 83.8
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 6.8e-160 567.8 403 81.4
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 9.8e-159 563.9 403 80.6
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 9.8e-159 563.9 403 81.6
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 6.1e-145 518.1 326 88.7
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 5.7e-143 511.5 412 73.8
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.6e-140 501.9 412 70.4
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 6.2e-137 491.5 412 71.6
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.4e-136 490.3 408 69.9
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.6e-135 486.1 408 69.4
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.2e-132 477.2 410 70.2
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 4.6e-132 475.3 425 67.8
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.0e-131 471.9 406 68.2
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.6e-129 466.8 412 67.5
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 8.9e-128 461.1 417 71.5
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.5e-127 460.3 419 67.3
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 4.4e-127 458.8 412 68.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 2.4e-125 453.0 411 67.6
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 3.5e-124 449.1 411 69.6
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 4.6e-124 448.7 413 67.1
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.0e-123 447.6 411 65.5
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 3.9e-123 445.7 405 66.2
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 5.1e-123 445.3 412 64.6
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 8.6e-123 444.5 404 64.6
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.9e-122 443.4 413 72.6
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 9.5e-122 441.0 406 66.7
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 4.0e-120 435.6 412 66.7
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.4e-119 432.6 426 65.3
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 4.4e-119 432.2 411 69.8
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 7.6e-119 431.4 415 64.6
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 9.9e-119 431.0 412 61.9
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.7e-118 430.3 408 70.6
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.2e-118 429.9 409 62.3
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 3.8e-118 429.1 411 69.8
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.8e-118 429.1 413 61.7
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 2.4e-117 426.4 410 61.2
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 2.4e-117 426.4 409 66.0
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 4.1e-117 425.6 407 64.1
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 5.4e-117 425.2 415 65.8
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 7.1e-117 424.9 404 66.3
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.6e-116 423.7 420 65.0
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 6.0e-116 421.8 410 63.7
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 2.3e-115 419.9 413 63.9
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.0e-115 419.5 404 62.9
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.9e-115 419.1 353 69.7
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 1.1e-114 417.5 419 66.1
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.9e-114 416.8 419 64.9
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 7.3e-114 414.8 353 69.4
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 9.6e-114 414.5 427 64.9
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.6e-113 413.7 411 65.0
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.6e-113 413.7 419 61.8
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.6e-113 412.5 353 69.1
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 4.7e-113 412.1 417 64.3
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.4e-112 410.6 412 63.3
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.4e-112 410.6 400 63.5
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 6.9e-112 408.3 404 67.1
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 4.4e-111 405.6 409 61.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 5.8e-111 405.2 411 62.8
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 9.9e-111 404.4 401 63.6
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.3e-110 404.1 409 60.9
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.7e-110 403.7 405 62.7
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 3.8e-110 402.5 410 62.9
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 8.4e-110 401.4 405 62.5
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 8.4e-110 401.4 400 61.0
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 1.1e-109 401.0 405 62.5
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.4e-109 400.6 340 70.6
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.9e-109 400.2 410 62.2
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.9e-109 400.2 435 63.0
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-109 399.8 405 62.0
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 4.2e-109 399.1 409 60.6
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 4.2e-109 399.1 428 66.4
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.2e-108 397.5 409 61.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.6e-108 397.1 429 65.5
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.6e-108 397.1 414 65.0
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 2.1e-108 396.7 400 61.8
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.1e-108 396.7 408 62.0
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 2.7e-108 396.4 413 65.9
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 3.5e-108 396.0 422 65.9
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.0e-107 394.4 400 62.2
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.3e-107 393.3 410 61.2
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.1e-106 391.0 414 64.5
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.9e-106 390.2 429 64.1
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.9e-106 390.2 429 64.1
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 2.5e-106 389.8 417 60.0
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 3.6e-105 386.0 408 61.5
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.1e-104 384.4 407 59.2
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 9.0e-104 381.3 341 66.0
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.5e-103 380.6 429 58.5
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 2.0e-103 380.2 429 63.4
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 3.4e-103 379.4 428 63.6
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.5e-103 379.0 420 62.4
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 7.6e-103 378.3 429 62.0
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 2.2e-102 376.7 324 69.4
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 2.9e-102 376.3 419 62.5
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-101 374.0 419 62.5
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-100 370.5 419 62.1
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 6.0e-100 368.6 410 59.3
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 3.0e-99 366.3 433 61.2
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 8.7e-99 364.8 330 66.4
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.5e-98 364.0 432 60.4
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 5.6e-98 362.1 315 67.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.6e-98 362.1 405 62.0
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.6e-97 359.4 330 63.3
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 8.1e-97 358.2 410 56.3
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 3.1e-96 356.3 435 60.0
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-95 354.0 411 55.2
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.6e-95 353.2 346 62.1
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.4e-95 352.8 408 59.3
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 5.8e-95 352.1 401 57.1
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-94 350.1 406 61.8
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.1e-93 347.8 437 57.2
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 2.3e-91 340.1 336 63.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 8.7e-91 338.2 349 61.0
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 6.9e-88 328.6 338 59.2
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 2.9e-86 323.2 338 55.6
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 3.3e-82 309.7 411 54.5
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 8.7e-75 285.0 238 69.7
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.9e-74 283.9 425 48.7
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 3.1e-72 276.6 380 50.8
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.9e-72 275.4 348 51.7
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.6e-71 273.5 350 51.7
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 6.1e-68 262.3 345 49.3
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.0e-62 245.0 318 52.2
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-62 245.0 400 48.5
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.2e-62 243.8 411 43.1
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.2e-53 213.4 229 56.8
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 3.6e-52 209.9 201 62.2
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 7.5e-50 202.2 276 54.7
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 7.5e-50 202.2 276 54.7
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 7.0e-48 195.7 241 50.6
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 2.2e-46 190.7 263 43.0
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.1e-45 188.3 339 44.2
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.2e-45 185.7 169 58.6
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.2e-44 184.9 277 54.2
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 6.1e-44 182.6 331 40.5
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.4e-43 181.4 216 55.1
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.5e-42 177.9 222 56.3
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 8.3e-41 172.2 346 37.3
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 9.5e-37 158.7 261 37.2
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 8.0e-36 155.6 102 77.5
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 3.1e-32 143.7 201 51.2
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 4.3e-29 133.3 147 64.6
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 2.1e-28 131.0 105 66.7
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 5.7e-26 122.9 246 34.1
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.5e-21 108.2 115 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.7e-14 84.7 228 27.6
Nitab4.5_0006780g0020 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.3e-09 68.6 42 83.3
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 6.4e-09 66.2 195 37.4
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 2.7e-07 60.8 41 75.6


User provided reference genes

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