Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g010300.4 Solanum lycopersicum HOM05D000068 ORTHO05D016561 1.4e-63 246.1 121 100.0
CAN.G1557.13 Capsicum annuum HOM05D000068 ORTHO05D003956 6.4e-29 131.0 62 100.0
Sopen04g005490 Solanum pennellii HOM05D000068 ORTHO05D003956 6.4e-29 131.0 62 100.0
Nitab4.5_0002655g0040 Nicotiana tabacum HOM05D000068 ORTHO05D003956 2.7e-27 125.6 62 95.2
Nitab4.5_0000426g0090 Nicotiana tabacum HOM05D000068 ORTHO05D003956 1.0e-26 123.6 61 95.1
Peaxi162Scf00060g00438 Petunia axillaris HOM05D000068 ORTHO05D003956 1.0e-26 123.6 60 96.7
SalBow6G0152 Salvia bowleyana HOM05D000068 ORTHO05D003956 2.6e-22 109.0 62 83.9
unitig_747.g21788 Utricularia gibba HOM05D000068 ORTHO05D003956 4.9e-21 104.8 83 65.1
Cc02_g08390 Coffea canephora HOM05D000068 ORTHO05D003956 8.3e-21 104.0 82 63.4
HanXRQChr14g0457711 Helianthus annuus HOM05D000068 ORTHO05D003956 1.4e-20 103.2 61 80.3
MSTRG.309 Avicennia marina HOM05D000068 ORTHO05D003956 2.4e-20 102.4 62 77.4
Migut.F01521 Erythranthe guttata HOM05D000068 ORTHO05D003956 4.1e-20 101.7 83 63.9
SGA_v2.0_scaffold108G31011 Striga asiatica HOM05D000068 ORTHO05D003956 9.2e-20 100.5 83 63.9
Hma1.2p1_0402F.1_g144950 Hydrangea macrophylla HOM05D000068 ORTHO05D003956 2.0e-19 99.4 82 62.2
Lsat_1_v5_gn_2_115960 Lactuca sativa HOM05D000068 ORTHO05D003956 2.0e-19 99.4 61 77.0
Actinidia34347 Actinidia chinensis HOM05D000068 ORTHO05D003956 2.7e-19 99.0 82 62.2
Dinv31417 Davidia involucrata HOM05D000068 ORTHO05D003956 2.7e-19 99.0 82 62.2
Oeu059706.1 Olea europaea HOM05D000068 ORTHO05D016561 2.7e-19 99.0 61 75.4
Lj8A89T28 Lonicera japonica HOM05D000068 ORTHO05D003956 3.5e-19 98.6 82 63.4
vmacro07146 Vaccinium macrocarpon HOM05D000068 ORTHO05D003956 6.0e-19 97.8 82 62.2
CSS0015971 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D003956 7.8e-19 97.4 82 61.0
Rhsim03G0127200 Rhododendron simsii HOM05D000068 ORTHO05D003956 7.8e-19 97.4 61 73.8
SEGI_33379 Sequoiadendron giganteum HOM05D000068 ORTHO05D003956 1.7e-18 96.3 99 57.6
ECA238G1581 Erigeron canadensis HOM05D000068 ORTHO05D003956 2.3e-18 95.9 65 69.2
Psat3g184480 Pisum sativum HOM05D000068 ORTHO05D003956 3.0e-18 95.5 64 71.9
ATR0033G039 Amborella trichopoda HOM05D000068 ORTHO05D003956 1.1e-17 93.6 60 75.0
DCAR_015215 Daucus carota HOM05D000068 ORTHO05D003956 1.1e-17 93.6 94 58.5
GSVIVG01016617001 Vitis vinifera HOM05D000068 ORTHO05D003956 1.1e-17 93.6 82 59.8
Aqoxy4G03027 Aquilegia oxysepala HOM05D000068 ORTHO05D003956 1.5e-17 93.2 82 61.0
FAN01G0364 Fragaria x ananassa HOM05D000068 ORTHO05D003956 1.5e-17 93.2 84 60.7
FAN10G0082 Fragaria x ananassa HOM05D000068 ORTHO05D003956 1.5e-17 93.2 84 60.7
Psat6g236760 Pisum sativum HOM05D000068 ORTHO05D003956 1.5e-17 93.2 64 71.9
RcHm_v2.0_Chr1g0365761 Rosa chinensis HOM05D000068 ORTHO05D003956 1.5e-17 93.2 84 60.7
TWI15G0634 Tripterygium wilfordii HOM05D000068 ORTHO05D003956 1.5e-17 93.2 67 70.1
Aa31LG5G20120 Aethionema arabicum HOM05D000068 ORTHO05D003956 1.9e-17 92.8 67 71.6
TWI63G0814 Tripterygium wilfordii HOM05D000068 ORTHO05D003956 2.5e-17 92.4 87 59.8
VMungo0720G1917 Vigna mungo HOM05D000068 ORTHO05D003956 2.5e-17 92.4 64 71.9
MSTRG.8234 Avicennia marina HOM05D000068 ORTHO05D003956 3.3e-17 92.0 100 54.0
FvH4_7g21390 Fragaria vesca HOM05D000068 ORTHO05D003956 4.3e-17 91.7 62 74.2
FAN06G0375 Fragaria x ananassa HOM05D000068 ORTHO05D003956 4.3e-17 91.7 62 74.2
FAN06G2447 Fragaria x ananassa HOM05D000068 ORTHO05D003956 4.3e-17 91.7 62 74.2
Phvul.007G010600 Phaseolus vulgaris HOM05D000068 ORTHO05D003956 4.3e-17 91.7 85 58.8
DCAR_027678 Daucus carota HOM05D000068 ORTHO05D003956 5.6e-17 91.3 82 58.5
QL08p058678 Quercus lobata HOM05D000068 ORTHO05D003956 5.6e-17 91.3 84 59.5
Hund20005 Selenicereus undatus HOM05D000068 ORTHO05D003956 5.6e-17 91.3 83 57.8
HPP92_001487 Vanilla planifolia HOM05D000068 ORTHO05D003956 5.6e-17 91.3 82 61.0
TAR623G1155 Trochodendron aralioides HOM05D000068 ORTHO05D003956 7.3e-17 90.9 82 59.8
CiPaw.01G282400 Carya illinoinensis HOM05D000068 ORTHO05D003956 9.5e-17 90.5 101 56.4
Ca_11297_v3 Cicer arietinum L. HOM05D000068 ORTHO05D003956 9.5e-17 90.5 85 58.8
Eucgr.J00052 Eucalyptus grandis HOM05D000068 ORTHO05D003956 9.5e-17 90.5 122 50.8
Cfa001528 Carpinus fangiana HOM05D000068 ORTHO05D003956 1.2e-16 90.1 84 60.7
Glyma.10G290800 Glycine max HOM05D000068 ORTHO05D003956 1.2e-16 90.1 85 57.6
MD07G1191100 Malus domestica HOM05D000068 ORTHO05D003956 1.6e-16 89.7 84 59.5
Medtr1g115430 Medicago truncatula HOM05D000068 ORTHO05D003956 1.6e-16 89.7 84 57.1
TPR.G14001 Trifolium pratense HOM05D000068 ORTHO05D003956 1.6e-16 89.7 64 70.3
Gohir.D04G061700 Gossypium hirsutum HOM05D000068 ORTHO05D003956 2.8e-16 89.0 65 70.8
Gorai.012G069000 Gossypium raimondii HOM05D000068 ORTHO05D003956 2.8e-16 89.0 65 70.8
Nn2g10493 Nelumbo nucifera HOM05D000068 ORTHO05D003956 6.2e-16 87.8 82 58.5
MBI05_g08788_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D003956 8.1e-16 87.4 82 56.1
Nn2g12881 Nelumbo nucifera HOM05D000068 ORTHO05D003956 8.1e-16 87.4 82 57.3
Glyma.20G239800 Glycine max HOM05D000068 ORTHO05D003956 1.1e-15 87.0 85 56.5
TAR369G0271 Trochodendron aralioides HOM05D000068 ORTHO05D003956 1.1e-15 87.0 82 56.1
Carub.0004s2155 Capsella rubella HOM05D000068 ORTHO05D003956 1.4e-15 86.7 67 68.7
Thhalv10016145m.g Eutrema salsugineum HOM05D000068 ORTHO05D003956 1.4e-15 86.7 67 70.1
PSO339G0013 Papaver somniferum HOM05D000068 ORTHO05D003956 1.4e-15 86.7 70 65.7
PSO384G2617 Papaver somniferum HOM05D000068 ORTHO05D003956 1.4e-15 86.7 70 65.7
GSVIVG01025040001 Vitis vinifera HOM05D000068 ORTHO05D003956 3.1e-15 85.5 83 55.4
Aa31LG10G10310 Aethionema arabicum HOM05D000068 ORTHO05D003956 4.0e-15 85.1 67 67.2
SMO367G0631 Selaginella moellendorffii HOM05D000068 ORTHO05D003956 5.2e-15 84.7 55 74.5
AT3G55320 Arabidopsis thaliana HOM05D000068 ORTHO05D003956 6.8e-15 84.3 69 62.3
C03p26240 Brassica napus HOM05D000068 ORTHO05D003956 6.8e-15 84.3 66 68.2
BolC3t15008H Brassica oleracea HOM05D000068 ORTHO05D003956 6.8e-15 84.3 66 68.2
CDE09G1026 Ceratophyllum demersum HOM05D000068 ORTHO05D003956 6.8e-15 84.3 81 56.8
Prupe.2G229100 Prunus persica HOM05D000068 ORTHO05D003956 6.8e-15 84.3 73 57.5
AT2G39480 Arabidopsis thaliana HOM05D000068 ORTHO05D003956 1.2e-14 83.6 79 58.2
CDE02G1090 Ceratophyllum demersum HOM05D000068 ORTHO05D003956 1.2e-14 83.6 81 56.8
PSO339G6153 Papaver somniferum HOM05D000068 ORTHO05D003956 1.5e-14 83.2 84 54.8
SHI22527 Sapria himalayana HOM05D000068 ORTHO05D003956 1.5e-14 83.2 103 50.5
AL4G36870 Arabidopsis lyrata HOM05D000068 ORTHO05D003956 2.0e-14 82.8 67 65.7
Lalb_Chr04g0257921 Lupinus albus HOM05D000068 ORTHO05D003956 2.0e-14 82.8 65 66.2
MD01G1121400 Malus domestica HOM05D000068 ORTHO05D003956 2.0e-14 82.8 73 56.2
Lalb_Chr02g0144021 Lupinus albus HOM05D000068 ORTHO05D003956 2.6e-14 82.4 63 66.7
Medtr7g023340 Medicago truncatula HOM05D000068 ORTHO05D003956 2.6e-14 82.4 73 54.8
Ah.10g033200 Amaranthus hybridus HOM05D000068 ORTHO05D003956 4.4e-14 81.6 75 60.0
Sp4g21780 Schrenkiella parvula HOM05D000068 ORTHO05D003956 4.4e-14 81.6 79 57.0
CANSAT56G1302 Cannabis sativa HOM05D000068 ORTHO05D003956 5.8e-14 81.3 83 54.2
Ca_07205_v3 Cicer arietinum L. HOM05D000068 ORTHO05D003956 5.8e-14 81.3 76 55.3
ClCG09G020190 Citrullus lanatus HOM05D000068 ORTHO05D003956 5.8e-14 81.3 48 79.2
MELO3C025468.2 Cucumis melo HOM05D000068 ORTHO05D003956 5.8e-14 81.3 48 79.2
CsaV3_5G026260 Cucumis sativus L. HOM05D000068 ORTHO05D003956 5.8e-14 81.3 48 79.2
Sed0003459 Sechium edule HOM05D000068 ORTHO05D003956 7.5e-14 80.9 49 75.5
Hund12553 Selenicereus undatus HOM05D000068 ORTHO05D003956 7.5e-14 80.9 86 53.5
HPP92_021166 Vanilla planifolia HOM05D000068 ORTHO05D003956 7.5e-14 80.9 81 54.3
Eucgr.G02905 Eucalyptus grandis HOM05D000068 ORTHO05D003956 9.8e-14 80.5 103 50.5
Mapoly0021s0082 Marchantia polymorpha HOM05D000068 ORTHO05D003956 1.3e-13 80.1 67 58.2
HanXRQChr08g0220221 Helianthus annuus HOM05D000068 ORTHO05D003956 1.7e-13 79.7 82 52.4
Sed0007890 Sechium edule HOM05D000068 ORTHO05D003956 2.2e-13 79.3 83 53.0
ECA233G0466 Erigeron canadensis HOM05D000068 ORTHO05D003956 2.9e-13 79.0 82 52.4
Manes.07G111300 Manihot esculenta HOM05D000068 ORTHO05D003956 3.7e-13 78.6 41 85.4
THA.LOC104810015 Tarenaya hassleriana HOM05D000068 ORTHO05D003956 3.7e-13 78.6 41 85.4
TPR.G15484 Trifolium pratense HOM05D000068 ORTHO05D003956 3.7e-13 78.6 40 85.0
arahy.Tifrunner.gnm1.ann1.JDZ0RF Arachis hypogaea HOM05D000068 ORTHO05D003956 4.9e-13 78.2 49 77.6
arahy.Tifrunner.gnm1.ann1.ZP6UQG Arachis hypogaea HOM05D000068 ORTHO05D003956 4.9e-13 78.2 49 77.6
BcaC02g09744 Brassica carinata HOM05D000068 ORTHO05D003956 4.9e-13 78.2 66 62.1
C04p37140 Brassica napus HOM05D000068 ORTHO05D003956 4.9e-13 78.2 66 62.1
BolC4t25276H Brassica oleracea HOM05D000068 ORTHO05D003956 4.9e-13 78.2 66 62.1
A05p06900 Brassica napus HOM05D000068 ORTHO05D003956 8.3e-13 77.4 40 87.5
C04p08170 Brassica napus HOM05D000068 ORTHO05D003956 8.3e-13 77.4 40 87.5
BolC4t22427H Brassica oleracea HOM05D000068 ORTHO05D003956 8.3e-13 77.4 40 87.5
BraA05t19655Z Brassica rapa HOM05D000068 ORTHO05D003956 8.3e-13 77.4 40 87.5
Glyma.18G286600 Glycine max HOM05D000068 ORTHO05D003956 1.1e-12 77.0 48 77.1
Gorai.011G252900 Gossypium raimondii HOM05D000068 ORTHO05D003956 1.1e-12 77.0 40 85.0
Lalb_Chr17g0336261 Lupinus albus HOM05D000068 ORTHO05D003956 1.1e-12 77.0 64 65.6
Sabra08G0035800 Salix brachista HOM05D000068 ORTHO05D003956 1.1e-12 77.0 101 50.5
AL5G36440 Arabidopsis lyrata HOM05D000068 ORTHO05D003956 1.4e-12 76.6 68 55.9
CARHR134350 Cardamine hirsuta HOM05D000068 ORTHO05D003956 1.4e-12 76.6 67 62.7
CARHR165300 Cardamine hirsuta HOM05D000068 ORTHO05D003956 1.4e-12 76.6 68 57.4
Atru.chr12.544 Acer truncatum HOM05D000068 ORTHO05D003956 1.9e-12 76.3 41 82.9
COL.COLO4_14920 Corchorus olitorius HOM05D000068 ORTHO05D003956 1.9e-12 76.3 37 91.9
Duzib114G0068 Durio zibethinus HOM05D000068 ORTHO05D003956 1.9e-12 76.3 37 91.9
Thecc.10G052400 Theobroma cacao HOM05D000068 ORTHO05D003956 1.9e-12 76.3 37 91.9
Lsat_1_v5_gn_8_16161 Lactuca sativa HOM05D000068 ORTHO05D003956 2.4e-12 75.9 61 63.9
A04p04620 Brassica napus HOM05D000068 ORTHO05D003956 3.2e-12 75.5 44 81.8
BraA04t16172Z Brassica rapa HOM05D000068 ORTHO05D003956 3.2e-12 75.5 44 81.8
Thhalv10010064m.g Eutrema salsugineum HOM05D000068 ORTHO05D003956 3.2e-12 75.5 66 59.1
arahy.Tifrunner.gnm1.ann1.E1W7E8 Arachis hypogaea HOM05D000068 ORTHO05D016561 4.1e-12 75.1 84 53.6
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 4.1e-12 75.1 52 73.1
BcaB02g09115 Brassica carinata HOM05D000068 ORTHO05D003956 4.1e-12 75.1 77 53.2
A03p22160 Brassica napus HOM05D000068 ORTHO05D003956 4.1e-12 75.1 40 85.0
Potri.008G050400 Populus trichocarpa HOM05D000068 ORTHO05D003956 4.1e-12 75.1 40 82.5
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.4e-12 74.7 52 73.1
Glyma.02G094800 Glycine max HOM05D000068 ORTHO05D003956 5.4e-12 74.7 40 82.5
Sabra10G0162400 Salix brachista HOM05D000068 ORTHO05D003956 5.4e-12 74.7 102 49.0
Lj1g0011982 Lotus japonicus HOM05D000068 ORTHO05D003956 9.2e-12 73.9 39 82.1
BcaB02g08430 Brassica carinata HOM05D000068 ORTHO05D003956 1.2e-11 73.6 44 79.5
Carub.0005s2196 Capsella rubella HOM05D000068 ORTHO05D003956 1.2e-11 73.6 41 78.0
Potri.010G210100 Populus trichocarpa HOM05D000068 ORTHO05D003956 1.2e-11 73.6 102 48.0
EL10Ac2g03452 Beta vulgaris HOM05D000068 ORTHO05D003956 1.6e-11 73.2 86 48.8
BraA03t11447Z Brassica rapa HOM05D000068 ORTHO05D003956 1.6e-11 73.2 39 84.6
AUR62022519 Chenopodium quinoa HOM05D000068 ORTHO05D003956 1.6e-11 73.2 85 50.6
Manes.10G034900 Manihot esculenta HOM05D000068 ORTHO05D003956 2.1e-11 72.8 88 48.9
Pp3c9_13390 Physcomitrium patens HOM05D000068 ORTHO05D003956 2.1e-11 72.8 72 54.2
Lj5g0000141 Lotus japonicus HOM05D000068 ORTHO05D003956 2.7e-11 72.4 39 82.1
Os01g0976100 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D003956 2.7e-11 72.4 41 82.9
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.5e-11 72.0 78 57.7
Sp5g07160 Schrenkiella parvula HOM05D000068 ORTHO05D003956 3.5e-11 72.0 66 57.6
AUR62035951 Chenopodium quinoa HOM05D000068 ORTHO05D003956 4.6e-11 71.6 36 88.9
PGR044G0060 Punica granatum HOM05D000068 ORTHO05D003956 4.6e-11 71.6 104 47.1
Os03g0280000 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D003956 1.0e-10 70.5 68 55.9
Zm00001eb139690 Zea mays HOM05D000068 ORTHO05D003956 1.7e-10 69.7 42 78.6
Pp3c2_13930 Physcomitrium patens HOM05D000068 ORTHO05D003956 2.3e-10 69.3 66 59.1
CARHR037690 Cardamine hirsuta HOM05D000068 ORTHO05D016561 8.6e-10 67.4 63 54.0
Lj2A1052G39 Lonicera japonica HOM05D000068 ORTHO05D003956 1.5e-09 66.6 56 57.1
Zm00001eb012760 Zea mays HOM05D000068 ORTHO05D003956 2.5e-09 65.9 67 56.7
HanXRQChr07g0200971 Helianthus annuus HOM05D000068 ORTHO05D003956 2.1e-08 62.8 61 54.1
Sc20g0002500 Simmondsia chinensis HOM05D000068 ORTHO05D003956 6.2e-08 61.2 64 50.0
PSO206G0002 Papaver somniferum HOM05D000068 ORTHO05D003956 4.0e-07 58.5 84 40.5
Gohir.D10G222500 Gossypium hirsutum HOM05D000068 ORTHO05D003956 7.6e-06 54.3 37 67.6
Haze_17013 Corylus avellana HOM05D000068 ORTHO05D003956 9.9e-06 53.9 83 39.8


User provided reference genes

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