Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 5.1e-27 123.6 61 100.0
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 5.1e-27 123.6 61 100.0
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 5.1e-27 123.6 61 100.0
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 5.1e-27 123.6 61 100.0
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 6.7e-27 123.2 61 98.4
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 8.7e-27 122.9 61 98.4
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.9e-23 110.2 61 91.8
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 5.9e-23 110.2 61 91.8
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 7.6e-23 109.8 61 91.8
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 7.6e-23 109.8 61 91.8
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 7.4e-18 93.2 61 77.0
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 7.4e-18 93.2 51 90.2
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 7.4e-18 93.2 61 77.0
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 7.4e-18 93.2 61 77.0
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 4.8e-17 90.5 61 75.4
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 4.8e-17 90.5 61 75.4
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 8.2e-17 89.7 61 75.4
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 5.3e-16 87.0 61 72.1
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.3e-16 87.0 47 91.5
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 75.4
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 68.9
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 2.6e-15 84.7 61 72.1
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 4.5e-15 84.0 61 70.5
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 5.9e-15 83.6 61 70.5
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 5.9e-15 83.6 61 70.5
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 5.9e-15 83.6 61 70.5
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 5.9e-15 83.6 61 70.5
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 5.9e-15 83.6 61 70.5
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 7.7e-15 83.2 61 70.5
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 7.7e-15 83.2 61 70.5
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 70.5
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 1.0e-14 82.8 62 75.8
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 1.3e-14 82.4 61 68.9
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 1.7e-14 82.0 60 71.7
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.9e-14 81.3 62 71.0
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.9e-14 81.3 62 71.0
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 2.9e-14 81.3 61 72.1
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 2.9e-14 81.3 58 74.1
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 72.1
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 72.1
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 67.2
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 67.2
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 3.8e-14 80.9 61 68.9
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 67.2
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 67.2
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 67.2
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 67.2
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 67.2
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 67.2
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 72.1
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 72.1
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 67.2
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 5.0e-14 80.5 61 68.9
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 5.0e-14 80.5 61 68.9
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 5.0e-14 80.5 61 68.9
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 5.0e-14 80.5 61 68.9
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 5.0e-14 80.5 61 67.2
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 6.5e-14 80.1 61 68.9
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 6.5e-14 80.1 61 68.9
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 6.5e-14 80.1 61 68.9
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 6.5e-14 80.1 61 68.9
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 6.5e-14 80.1 61 68.9
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 8.5e-14 79.7 62 69.4
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 8.5e-14 79.7 62 69.4
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 8.5e-14 79.7 62 69.4
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 8.5e-14 79.7 62 69.4
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 8.5e-14 79.7 62 69.4
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 8.5e-14 79.7 62 69.4
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 8.5e-14 79.7 58 72.4
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.1e-13 79.3 61 65.6
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.1e-13 79.3 61 65.6
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.1e-13 79.3 61 67.2
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 1.1e-13 79.3 61 67.2
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 1.4e-13 79.0 61 67.2
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 1.4e-13 79.0 61 67.2
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 1.4e-13 79.0 61 67.2
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 1.4e-13 79.0 62 69.4
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 1.9e-13 78.6 58 72.4
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.9e-13 78.6 61 65.6
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.5e-13 78.2 58 69.0
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.5e-13 78.2 58 69.0
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 3.2e-13 77.8 61 67.2
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 3.2e-13 77.8 61 67.2
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 5.5e-13 77.0 58 69.0
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 7.2e-13 76.6 62 67.7
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 7.2e-13 76.6 59 66.1
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 1.2e-12 75.9 58 69.0
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 1.2e-12 75.9 60 65.0
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.6e-12 75.5 62 67.7
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 1.6e-12 75.5 49 73.5
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 2.1e-12 75.1 58 65.5
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 2.7e-12 74.7 61 63.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.6e-12 74.3 56 69.6
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 3.6e-12 74.3 58 67.2
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 3.6e-12 74.3 58 67.2
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 4.6e-12 73.9 60 63.3
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 6.7e-11 70.1 56 69.6
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 1.1e-10 69.3 58 63.8
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.5e-10 68.9 49 69.4
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 1.5e-10 68.9 55 63.6
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 3.3e-10 67.8 52 69.2
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 5.7e-10 67.0 61 60.7
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 1.3e-09 65.9 53 62.3
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 2.2e-09 65.1 57 63.2
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 6.3e-09 63.5 59 55.9
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 1.8e-08 62.0 61 55.7
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 5.3e-08 60.5 61 55.7
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 9.1e-08 59.7 61 55.7
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 1.2e-07 59.3 61 52.5
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.5e-07 58.9 57 56.1
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 2.6e-07 58.2 51 60.8
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 3.4e-07 57.8 57 56.1
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 4.5e-07 57.4 57 54.4
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 5.9e-07 57.0 57 59.6
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 2.2e-06 55.1 47 59.6
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 6.5e-06 53.5 56 48.2
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 8.5e-06 53.1 47 53.2
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 8.5e-06 53.1 47 53.2


User provided reference genes

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