Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 7.5e-98 360.5 184 100.0
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 7.5e-98 360.5 184 100.0
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.6e-95 352.8 184 97.8
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.6e-90 335.5 184 91.3
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 9.8e-90 333.6 184 90.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.7e-89 332.8 185 91.9
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 2.1e-79 299.3 184 81.0
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 2.5e-77 292.4 181 82.3
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.6e-76 289.7 180 81.7
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.6e-76 288.5 180 81.1
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 6.2e-76 287.7 186 81.7
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.8e-75 286.2 180 81.7
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 3.1e-75 285.4 192 76.6
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 4.0e-75 285.0 183 81.4
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 6.8e-75 284.3 180 81.1
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 3.4e-74 282.0 185 80.5
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.8e-74 281.2 180 81.7
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.7e-73 279.6 180 79.4
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.7e-73 279.6 180 79.4
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.9e-73 278.9 184 77.2
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.9e-73 278.9 184 77.2
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 4.9e-73 278.1 183 78.1
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 8.3e-73 277.3 185 80.5
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.1e-72 276.9 181 79.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 2.4e-72 275.8 186 76.9
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 5.4e-72 274.6 185 76.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 5.4e-72 274.6 185 80.0
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.2e-71 273.5 185 77.8
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 2.7e-71 272.3 183 76.0
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.6e-71 271.6 181 79.0
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 6.0e-71 271.2 172 82.0
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.0e-70 270.4 175 79.4
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.3e-70 270.0 175 79.4
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.3e-70 270.0 175 79.4
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.7e-70 269.6 186 74.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.7e-70 269.6 186 80.1
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 5.1e-70 268.1 178 76.4
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 6.6e-70 267.7 185 77.3
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 6.6e-70 267.7 179 75.4
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 6.6e-70 267.7 178 74.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 8.6e-70 267.3 185 76.2
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 8.6e-70 267.3 175 78.9
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-69 266.9 185 75.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.3e-69 264.2 184 75.0
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 9.6e-69 263.8 178 77.0
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 9.6e-69 263.8 186 76.9
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.2e-68 263.5 185 76.2
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.1e-68 262.7 184 75.5
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 2.8e-68 262.3 173 77.5
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.8e-68 262.3 178 77.5
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.6e-68 261.9 181 75.7
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 4.7e-68 261.5 185 74.6
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.1e-67 260.4 185 73.0
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.1e-67 260.4 185 73.0
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.4e-67 260.0 178 77.0
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.4e-67 260.0 179 75.4
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.8e-67 259.6 185 72.4
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.8e-67 259.6 186 73.1
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.8e-67 259.6 185 73.0
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.8e-67 259.6 186 74.7
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 2.4e-67 259.2 185 72.4
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 2.4e-67 259.2 185 72.4
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.4e-67 259.2 178 77.0
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.4e-67 259.2 181 72.9
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 2.4e-67 259.2 182 74.2
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 4.0e-67 258.5 187 73.3
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 8.9e-67 257.3 177 74.0
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 8.9e-67 257.3 181 76.8
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.2e-66 256.9 181 75.1
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.5e-66 256.5 185 73.0
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.5e-66 256.5 185 73.0
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 2.0e-66 256.1 181 72.4
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.6e-66 255.8 181 75.7
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.6e-66 255.8 175 78.3
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.6e-66 255.8 184 71.7
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.6e-66 254.2 184 71.2
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 9.9e-66 253.8 181 72.9
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.3e-65 253.4 179 70.4
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.3e-65 253.4 182 75.3
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.3e-65 253.4 184 72.8
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.7e-65 253.1 182 72.0
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.2e-65 252.7 179 70.4
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.9e-65 252.3 180 75.0
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 6.4e-65 251.1 185 72.4
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 6.4e-65 251.1 181 75.1
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 6.4e-65 251.1 172 77.3
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 6.4e-65 251.1 180 75.0
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.1e-64 250.4 184 72.3
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.4e-64 250.0 185 71.9
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.4e-64 250.0 182 69.8
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 9.3e-64 247.3 184 71.2
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.1e-63 246.1 180 71.7
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 4.6e-63 245.0 185 73.0
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 4.6e-63 245.0 184 71.7
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 4.6e-63 245.0 181 71.3
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.8e-63 244.2 185 70.8
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.3e-62 243.4 178 71.3
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.3e-62 242.7 172 71.5
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.1e-62 241.5 180 72.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 8.7e-62 240.7 182 71.4
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 8.7e-62 240.7 178 70.8
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.1e-61 240.4 178 69.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.1e-61 240.4 172 69.8
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.5e-61 239.2 185 71.9
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 3.3e-61 238.8 180 69.4
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 4.3e-61 238.4 180 70.6
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 5.6e-61 238.0 180 70.6
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 9.6e-61 237.3 187 68.4
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 9.6e-61 237.3 187 68.4
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.8e-60 235.7 169 71.0
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.8e-60 235.7 169 71.0
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 3.6e-60 235.3 179 72.6
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 8.1e-60 234.2 179 68.2
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 2.4e-59 232.6 181 67.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 4.0e-59 231.9 153 78.4
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 6.9e-59 231.1 183 66.7
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.5e-58 229.9 176 69.3
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 3.4e-58 228.8 180 68.3
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 9.9e-58 227.3 163 73.6
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.3e-57 226.9 180 66.7
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.3e-57 226.9 179 68.2
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 8.4e-57 224.2 199 62.8
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.4e-56 223.4 185 68.1
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 4.2e-56 221.9 155 74.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 4.6e-55 218.4 133 85.0
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 5.1e-54 214.9 175 64.6
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 5.1e-54 214.9 183 61.7
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.1e-53 213.8 177 66.1
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.9e-53 213.0 179 63.1
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 4.8e-52 208.4 247 48.6
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 3.1e-51 205.7 118 83.1
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 9.0e-51 204.1 178 64.6
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.1e-48 197.2 193 61.7
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 4.3e-45 185.3 195 57.4
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.6e-44 183.3 180 55.6
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.1e-44 183.0 182 54.9
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.1e-43 180.6 129 65.9
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 4.0e-43 178.7 143 60.1
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.5e-42 176.8 186 53.2
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.5e-37 159.5 90 86.7
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.9e-35 151.4 87 86.2
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 2.6e-34 149.4 183 47.5
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.5e-34 148.7 83 84.3
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 7.6e-34 147.9 122 64.8
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 3.2e-32 142.5 135 59.3
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 2.1e-31 139.8 85 80.0
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 7.9e-31 137.9 113 66.4
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.3e-30 136.3 178 46.6
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 5.7e-29 131.7 142 54.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.8e-28 129.4 102 67.6
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.2e-23 114.0 127 48.0
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 3.9e-22 109.0 118 44.9
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 6.7e-22 108.2 104 58.7
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 6.7e-22 108.2 104 58.7
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.3e-20 104.0 105 46.7
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.8e-19 100.1 90 61.1
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.8e-19 100.1 92 62.0
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 3.1e-19 99.4 139 41.0
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.9e-15 84.7 47 87.2
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 6.7e-14 81.6 84 53.6
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.3e-12 77.4 87 51.7
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 8.2e-12 74.7 65 60.0
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 5.9e-10 68.6 89 36.0
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.2e-09 66.6 71 54.9
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 9.4e-08 61.2 197 33.0
Nitab4.5_0000520g0020 Nicotiana tabacum HOM05D000924 ORTHO05D001209 5.2e-06 55.5 71 47.9
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 8.8e-06 54.7 100 36.0


User provided reference genes

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