Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.0e-259 899.8 550 100.0
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 2.3e-251 872.1 551 92.0
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 5.5e-197 691.4 556 75.2
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 3.7e-193 678.7 554 75.5
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 5.4e-160 568.5 560 62.1
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 3.2e-152 542.7 376 80.1
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 4.6e-143 512.3 543 57.6
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 7.4e-141 505.0 558 61.5
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.8e-140 503.1 558 62.9
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 3.4e-138 496.1 540 54.1
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 3.2e-136 489.6 555 53.5
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 5.5e-136 488.8 378 67.7
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.0e-135 485.3 562 59.3
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 4.2e-120 436.0 346 67.1
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 2.3e-118 430.3 379 58.6
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 3.0e-118 429.9 351 61.0
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 3.0e-118 429.9 357 61.6
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 1.4e-115 421.0 373 58.7
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 9.1e-115 418.3 356 61.2
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 3.4e-114 416.4 338 61.2
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 3.4e-114 416.4 366 57.9
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 3.8e-113 412.9 352 58.0
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 1.2e-111 407.9 355 56.3
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 6.3e-108 395.6 369 58.0
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 8.2e-108 395.2 331 58.9
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 2.4e-107 393.7 374 55.1
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 9.1e-107 391.7 355 59.2
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 1.2e-106 391.3 369 56.9
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 2.6e-106 390.2 365 53.7
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 3.5e-106 389.8 375 51.7
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.3e-105 387.9 349 53.3
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 8.5e-105 385.2 349 53.0
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 8.5e-105 385.2 378 52.9
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.4e-104 384.4 353 52.1
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.9e-104 384.0 365 55.1
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 2.5e-104 383.6 375 49.9
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 3.2e-104 383.3 327 58.4
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 4.2e-104 382.9 339 53.4
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 5.5e-104 382.5 362 56.1
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 7.2e-104 382.1 357 53.2
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 7.2e-104 382.1 377 52.5
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.1e-103 380.6 354 54.0
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 3.6e-103 379.8 368 56.2
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 4.7e-103 379.4 325 54.5
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.0e-102 378.3 322 57.8
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 1.4e-102 377.9 353 54.7
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 3.0e-102 376.7 386 49.2
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 5.2e-102 375.9 344 54.7
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 8.8e-102 375.2 364 57.7
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 8.8e-102 375.2 386 50.8
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.5e-101 374.4 352 53.4
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 4.4e-101 372.9 360 51.1
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 7.4e-101 372.1 378 52.9
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 9.7e-101 371.7 355 53.8
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.8e-100 370.2 332 59.6
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.1e-99 368.2 337 52.5
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 1.1e-99 368.2 372 51.3
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.4e-99 367.9 358 52.2
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 7.0e-99 365.5 372 51.1
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 1.2e-98 364.8 337 52.2
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 1.2e-98 364.8 385 50.1
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 1.2e-98 364.8 379 48.8
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 2.6e-98 363.6 380 50.3
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 4.5e-98 362.8 355 58.0
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 1.3e-97 361.3 302 58.6
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 1.3e-97 361.3 339 52.5
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 1.7e-97 360.9 376 49.7
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 6.5e-97 359.0 355 58.0
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.5e-96 357.8 368 50.5
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 1.5e-96 357.8 355 52.1
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 7.2e-96 355.5 355 52.4
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 9.4e-96 355.1 356 54.2
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.2e-95 354.8 337 53.4
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.2e-95 354.8 339 52.5
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 2.1e-95 354.0 338 52.4
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 2.7e-95 353.6 315 54.3
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 3.6e-95 353.2 367 48.5
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 3.6e-95 353.2 332 53.0
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 3.6e-95 353.2 321 54.2
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 3.6e-95 353.2 377 46.9
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 6.1e-95 352.4 366 48.6
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 6.1e-95 352.4 333 55.0
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.4e-94 351.3 358 50.3
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.3e-94 350.5 352 50.6
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 4.0e-94 349.7 323 57.6
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 4.0e-94 349.7 312 52.2
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 4.4e-93 346.3 373 52.8
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 4.4e-93 346.3 369 54.7
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 4.4e-93 346.3 364 49.2
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.3e-92 344.7 362 48.1
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 3.7e-92 343.2 377 48.8
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 4.8e-92 342.8 362 48.1
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 6.3e-92 342.4 369 48.8
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 7.0e-91 339.0 369 49.3
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 9.1e-91 338.6 366 48.9
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 1.6e-90 337.8 349 54.2
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 3.8e-89 333.2 342 49.1
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 2.5e-88 330.5 379 46.2
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 5.5e-88 329.3 341 53.1
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 7.2e-88 328.9 380 46.1
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 7.2e-88 328.9 380 50.5
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 7.2e-88 328.9 347 51.9
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.2e-87 328.2 391 49.1
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 1.2e-87 328.2 368 49.2
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 2.1e-87 327.4 376 51.9
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 2.7e-87 327.0 342 48.8
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 6.1e-87 325.9 375 50.4
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 6.1e-87 325.9 323 55.1
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 8.0e-87 325.5 386 50.0
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 3.0e-86 323.6 356 52.5
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 8.8e-86 322.0 380 45.3
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 8.8e-86 322.0 362 51.4
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 8.8e-86 322.0 364 51.6
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 8.8e-86 322.0 357 50.4
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.2e-85 321.6 372 50.3
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 5.7e-85 319.3 352 49.1
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 5.7e-85 319.3 367 46.9
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 2.2e-84 317.4 240 64.2
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.1e-83 315.1 405 42.7
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 3.1e-83 313.5 343 44.9
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 2.0e-82 310.8 334 51.5
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.7e-81 307.8 355 49.6
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 2.3e-81 307.4 299 51.2
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.3e-81 307.4 374 48.7
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.3e-81 307.4 374 48.9
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 2.9e-81 307.0 368 47.6
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 3.8e-81 306.6 338 51.2
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 8.6e-81 305.4 281 55.5
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 5.5e-80 302.8 368 47.3
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 2.1e-79 300.8 282 52.8
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.1e-79 300.8 273 58.2
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 2.8e-79 300.4 330 50.3
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 6.1e-79 299.3 288 51.4
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.0e-78 298.5 367 47.7
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.0e-78 298.5 367 47.7
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 8.9e-78 295.4 373 46.9
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 1.7e-76 291.2 364 46.4
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 2.7e-66 257.3 376 41.0
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 2.1e-63 247.7 311 39.2
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 4.0e-62 243.4 267 51.7
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.3e-60 238.4 334 40.1
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 7.0e-59 232.6 331 41.4
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 4.6e-58 229.9 329 38.0
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 5.1e-57 226.5 326 42.6
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.1e-56 225.3 331 41.1
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 5.6e-56 223.0 331 41.1
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.4e-53 213.4 211 49.8
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 3.5e-50 203.8 343 32.7
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 4.6e-50 203.4 291 40.5
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.0e-49 200.7 198 46.5
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.3e-48 196.8 164 70.1
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 9.5e-48 195.7 319 34.5
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.4e-46 191.8 326 36.8
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 1.4e-46 191.8 333 38.7
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.4e-46 191.0 326 37.1
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 5.2e-46 189.9 351 31.3
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 4.4e-45 186.8 269 36.4
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.2e-42 178.7 268 33.2
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 6.0e-42 176.4 203 45.3
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 1.5e-40 171.8 286 32.2
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.5e-37 161.8 133 58.6
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 4.6e-34 150.2 137 53.3
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.7e-33 148.3 246 37.4
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 5.1e-33 146.7 166 43.4
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.3e-32 144.1 118 59.3
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.8e-30 138.3 147 46.3
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 6.4e-28 129.8 107 58.9
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 7.6e-21 106.3 228 34.6
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 8.4e-20 102.8 83 56.6
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.6e-18 98.6 108 45.4
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 1.5e-13 82.0 54 61.1
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.5e-13 82.0 70 52.9
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 3.2e-11 74.3 101 42.6
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 3.5e-10 70.9 173 33.5
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 8.7e-09 66.2 85 40.0


User provided reference genes

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