Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 5.3e-178 628.6 450 100.0
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 1.0e-173 614.4 448 98.7
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 5.3e-170 602.1 450 97.6
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 2.2e-155 553.5 451 90.9
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 1.7e-152 543.9 458 89.3
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 8.6e-152 541.6 448 90.2
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 1.9e-143 513.8 453 87.2
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 6.4e-123 445.7 429 82.8
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 1.9e-119 434.1 443 78.8
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 7.6e-116 422.2 419 82.3
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 2.7e-113 413.7 447 75.2
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 4.6e-113 412.9 448 75.9
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 4.6e-113 412.9 448 75.9
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.9e-111 407.5 406 82.3
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.9e-111 407.5 424 80.2
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 1.9e-111 407.5 444 75.9
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 2.4e-109 400.6 447 75.6
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 3.2e-106 390.2 449 71.7
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 5.1e-104 382.9 433 75.1
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 3.3e-103 380.2 452 72.3
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 1.3e-102 378.3 429 76.2
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 2.1e-102 377.5 435 74.3
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 2.6e-100 370.5 454 71.8
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 4.5e-100 369.8 441 73.5
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 3.0e-96 357.1 440 70.9
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 8.7e-96 355.5 436 70.9
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 4.3e-95 353.2 435 70.6
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 5.6e-95 352.8 440 70.0
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 2.1e-94 350.9 447 69.8
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 6.2e-94 349.4 439 70.6
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 8.1e-94 349.0 454 69.2
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 1.8e-93 347.8 438 71.0
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 2.4e-93 347.4 451 69.6
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 5.3e-93 346.3 447 70.5
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 9.0e-93 345.5 434 68.9
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 9.0e-93 345.5 434 69.8
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 2.6e-92 344.0 451 68.7
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 4.5e-92 343.2 445 71.5
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 2.2e-91 340.9 451 68.3
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 8.4e-91 339.0 437 68.6
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 1.1e-90 338.6 449 67.7
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 9.3e-90 335.5 432 70.8
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 9.3e-90 335.5 442 67.2
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 1.2e-89 335.1 445 70.6
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 1.6e-89 334.7 449 67.5
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 1.0e-88 332.0 438 68.9
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 1.0e-88 332.0 445 69.9
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 1.3e-88 331.6 451 68.1
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 2.3e-88 330.9 446 68.6
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 8.7e-88 328.9 448 66.7
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 8.7e-88 328.9 434 69.4
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 8.7e-88 328.9 457 66.1
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 1.1e-87 328.6 437 70.0
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 1.5e-87 328.2 407 73.2
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 2.4e-85 320.9 439 67.2
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 4.1e-85 320.1 424 60.4
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 4.1e-85 320.1 432 66.9
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 9.0e-85 318.9 446 67.3
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 1.2e-84 318.5 439 67.7
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 2.0e-84 317.8 433 68.1
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 3.4e-84 317.0 427 69.8
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 7.6e-84 315.8 453 67.5
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 1.0e-83 315.5 461 66.8
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.2e-83 314.3 422 70.1
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 5.0e-83 313.2 433 67.9
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 1.1e-82 312.0 433 68.1
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 3.2e-82 310.5 453 65.1
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 4.2e-82 310.1 435 67.4
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 1.2e-81 308.5 421 69.6
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 2.7e-81 307.4 453 64.9
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 2.7e-81 307.4 453 64.9
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 2.3e-80 304.3 412 68.7
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 3.0e-80 303.9 419 69.2
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 8.7e-80 302.4 438 66.0
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 3.7e-78 297.0 440 65.2
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 4.8e-78 296.6 430 64.4
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 6.3e-78 296.2 192 75.0
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.1e-77 295.4 522 48.1
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 6.9e-77 292.7 461 62.9
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 5.9e-76 289.7 397 69.8
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 2.9e-75 287.3 398 68.3
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 4.6e-73 280.0 439 63.8
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 7.9e-73 279.3 439 64.7
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 3.9e-72 276.9 415 46.3
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 8.8e-72 275.8 439 63.8
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 1.5e-68 265.0 435 63.7
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 1.7e-67 261.5 445 47.2
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 1.3e-59 235.3 234 53.8
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 3.8e-59 233.8 239 52.3
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 1.3e-51 208.8 410 62.4
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 4.5e-44 183.7 133 66.2
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 4.2e-42 177.2 404 59.2
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 6.1e-41 173.3 275 80.4
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 1.3e-35 155.6 95 73.7
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 4.3e-34 150.6 95 71.6
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 7.3e-34 149.8 131 56.5
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 1.6e-33 148.7 95 69.5
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 1.2e-31 142.5 95 69.5
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 1.8e-29 135.2 95 67.4
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 2.7e-28 131.3 95 63.2
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 6.6e-27 126.7 71 81.7
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.8e-25 121.3 69 78.3
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 6.8e-24 116.7 66 78.8
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 3.7e-22 110.9 398 54.8
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 9.5e-18 96.3 62 64.5
SMO364G0905 Selaginella moellendorffii HOM05D031156 ORTHO05D000355 3.4e-07 61.2 230 25.7
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 2.2e-06 58.5 208 24.0
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 2.9e-06 58.2 148 29.1


User provided reference genes

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