Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 0.0e+00 1094.3 699 100.0
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 4.8e-312 1073.9 699 98.6
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 3.0e-256 888.6 700 84.4
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 7.7e-236 820.8 553 81.0
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 5.0e-219 765.0 489 82.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.2e-214 749.6 453 85.0
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 5.2e-208 728.4 535 73.5
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 3.3e-202 709.1 730 65.5
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.1e-197 694.1 701 71.2
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 2.1e-193 679.9 699 63.5
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 7.1e-189 664.8 724 67.7
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 2.1e-188 663.3 517 70.4
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.7e-188 662.9 516 70.5
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 6.0e-188 661.8 492 69.5
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.0e-187 661.0 516 70.2
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.7e-187 660.2 473 73.2
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 3.0e-187 659.4 723 66.1
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.9e-186 656.8 511 69.7
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 4.3e-186 655.6 516 69.8
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 4.3e-186 655.6 518 69.5
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.2e-185 654.1 510 69.0
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.6e-185 653.7 531 66.7
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 2.8e-185 652.9 513 68.0
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 8.9e-184 647.9 516 68.2
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 2.6e-183 646.4 517 68.1
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 3.4e-183 646.0 516 68.6
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 4.4e-183 645.6 507 69.2
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 9.9e-183 644.4 517 68.5
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.3e-182 644.0 532 64.8
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.2e-182 643.3 517 67.7
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 3.8e-182 642.5 514 68.9
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 4.1e-181 639.0 517 66.5
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 4.1e-181 639.0 701 61.9
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 5.4e-181 638.6 524 67.6
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.2e-180 637.5 527 66.6
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 2.1e-180 636.7 520 66.5
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 2.1e-180 636.7 520 66.7
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.7e-180 636.3 517 67.7
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.5e-180 636.0 517 67.1
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 4.6e-180 635.6 706 69.0
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 6.0e-180 635.2 516 68.0
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.9e-179 632.5 519 67.4
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 5.1e-179 632.1 516 66.9
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 5.1e-179 632.1 543 64.5
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.5e-178 630.6 709 60.8
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.9e-178 630.2 455 71.2
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.5e-178 629.8 526 67.7
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 9.6e-178 627.9 512 67.6
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.2e-177 627.5 516 67.2
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.6e-177 627.1 516 67.2
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.6e-177 627.1 516 67.1
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 2.1e-177 626.7 455 71.4
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 2.8e-177 626.3 535 66.5
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 4.0e-176 622.5 519 67.2
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.2e-175 620.9 707 61.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.0e-175 620.2 516 66.5
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 5.8e-175 618.6 515 67.2
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 2.2e-174 616.7 516 66.3
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 4.9e-174 615.5 424 73.3
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.4e-173 614.0 495 64.8
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.4e-173 613.2 516 64.9
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 5.4e-173 612.1 539 62.2
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.4e-173 612.1 465 70.3
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 5.4e-173 612.1 519 64.5
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.2e-172 610.9 524 63.9
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 7.8e-172 608.2 512 66.6
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 7.8e-172 608.2 534 64.6
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.3e-171 607.4 516 64.7
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.9e-170 603.6 482 67.0
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.9e-170 603.6 465 69.5
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 3.3e-170 602.8 501 64.3
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 4.3e-170 602.4 517 66.7
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 7.3e-170 601.7 549 61.9
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 6.2e-169 598.6 517 63.6
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.4e-168 597.4 525 62.5
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.4e-168 597.4 476 65.5
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 5.8e-167 592.0 426 70.4
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 4.9e-166 589.0 513 63.7
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 5.4e-165 585.5 527 62.4
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.2e-164 584.3 515 62.7
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 2.7e-164 583.2 526 61.8
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.1e-162 577.8 725 63.7
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 5.6e-162 575.5 496 62.9
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 2.1e-161 573.5 510 62.4
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.1e-161 573.5 477 64.6
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.8e-161 572.4 457 66.7
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.2e-159 567.8 520 62.1
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.5e-159 567.4 421 68.6
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.4e-157 560.1 536 57.8
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.6e-156 557.4 395 71.1
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.0e-155 554.7 516 61.0
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.1e-154 551.2 508 61.2
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.5e-154 550.1 438 64.2
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 2.1e-153 547.0 709 61.4
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 3.7e-153 546.2 477 62.3
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.2e-150 537.0 515 57.9
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.8e-150 536.2 707 58.3
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 3.8e-150 536.2 392 74.7
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 7.4e-146 521.9 427 61.8
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.2e-145 520.4 432 61.1
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.1e-144 516.2 515 57.1
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.0e-142 511.5 378 65.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 4.6e-140 502.7 454 57.7
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 5.1e-139 499.2 451 60.5
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 5.1e-139 499.2 540 55.0
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.5e-138 497.7 542 55.2
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 6.3e-137 492.3 456 58.3
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.9e-134 483.4 511 54.8
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.5e-133 480.3 411 61.1
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.7e-129 467.6 372 64.5
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.3e-122 443.4 441 55.6
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.1e-116 424.1 325 64.9
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.4e-115 421.4 349 66.2
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.7e-113 414.5 354 62.4
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.2e-108 398.3 429 51.0
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 2.0e-106 391.0 350 58.6
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 4.8e-105 386.3 429 50.6
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 6.6e-102 375.9 382 53.7
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 8.0e-100 369.0 410 50.2
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.5e-90 335.9 443 46.0
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.4e-89 332.8 225 73.8
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.7e-86 324.7 439 49.0
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 8.0e-84 315.8 329 57.4
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 4.7e-76 290.0 498 40.6
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.6e-71 275.0 375 45.3
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 5.1e-70 270.0 458 64.2
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.9e-69 268.1 181 73.5
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 7.3e-69 266.2 379 41.4
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 5.8e-66 256.5 211 63.5
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.8e-52 211.1 188 58.5
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.6e-47 195.3 516 30.0
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 4.6e-47 193.7 207 51.7
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.4e-43 182.2 171 57.9
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 5.7e-37 160.2 177 57.6
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 2.2e-28 131.7 316 55.7
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 2.8e-28 131.3 88 73.9
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 6.3e-28 130.2 110 59.1
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.4e-27 129.0 110 59.1
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 1.9e-24 118.6 95 58.9
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 4.2e-24 117.5 121 57.0
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 6.1e-23 113.6 267 32.2
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 5.7e-21 107.1 121 59.5
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 2.2e-17 95.1 365 26.8
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 6.5e-17 93.6 314 57.0
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 9.4e-16 89.7 132 44.7
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.9e-15 86.7 123 42.3
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.8e-14 83.2 111 45.9
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 1.1e-13 82.8 44 88.6
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 3.1e-11 74.7 117 39.3
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.2e-10 72.8 162 32.1
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.9e-08 65.5 94 37.2
Solyc03g121000.3 Solanum lycopersicum HOM05D022075 ORTHO05D030648 3.6e-07 61.2 90 45.6
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 1.4e-06 59.3 51 62.7
Sopen03g039830 Solanum pennellii HOM05D022075 ORTHO05D030648 3.0e-06 58.2 104 42.3


User provided reference genes

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