Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 7.1e-98 360.5 175 100.0
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.5e-58 229.2 248 52.4
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 9.4e-58 227.3 248 51.2
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.1e-57 226.1 248 51.2
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.6e-57 225.3 248 51.6
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 3.6e-57 225.3 248 51.6
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 4.0e-56 221.9 248 51.6
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 6.8e-56 221.1 243 51.0
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 3.7e-54 215.3 248 48.4
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 2.7e-52 209.1 244 47.5
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.3e-51 206.8 248 47.2
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 2.9e-51 205.7 248 47.2
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 6.5e-51 204.5 248 47.6
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 8.5e-51 204.1 241 47.3
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 5.5e-50 201.4 247 47.8
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 9.4e-50 200.7 238 47.9
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 9.4e-50 200.7 243 46.9
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.2e-49 200.3 241 47.3
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.2e-49 200.3 243 47.3
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 2.7e-49 199.1 245 45.7
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 3.6e-49 198.7 244 45.9
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 3.6e-49 198.7 248 46.4
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 4.7e-49 198.4 245 45.7
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 6.1e-49 198.0 248 44.8
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.0e-48 197.2 244 45.1
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.8e-48 196.4 244 44.7
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 1.8e-48 196.4 241 46.1
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 3.0e-48 195.7 238 47.5
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 4.0e-48 195.3 245 45.3
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 4.0e-48 195.3 237 46.8
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 5.2e-48 194.9 241 44.8
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 6.8e-48 194.5 241 45.2
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 6.8e-48 194.5 238 45.0
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 6.8e-48 194.5 238 46.2
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 6.8e-48 194.5 245 45.3
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 8.8e-48 194.1 244 44.7
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 8.8e-48 194.1 241 45.6
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 1.2e-47 193.7 239 45.2
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 1.2e-47 193.7 239 45.2
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.2e-47 193.7 238 46.2
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 2.0e-47 193.0 218 47.2
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.0e-47 193.0 241 45.6
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 2.0e-47 193.0 238 46.6
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.6e-47 192.6 241 45.2
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.6e-47 192.6 241 45.2
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 3.4e-47 192.2 236 46.2
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 4.4e-47 191.8 238 45.4
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 5.7e-47 191.4 238 46.2
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 5.7e-47 191.4 238 45.4
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 5.7e-47 191.4 242 44.6
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 5.7e-47 191.4 241 44.8
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 7.5e-47 191.0 242 44.2
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 9.8e-47 190.7 236 45.3
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.7e-46 189.9 240 45.4
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 1.7e-46 189.9 240 45.0
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 2.2e-46 189.5 248 42.7
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.2e-46 189.5 236 44.9
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 3.7e-46 188.7 238 46.2
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 4.9e-46 188.3 241 44.4
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 6.3e-46 188.0 243 44.9
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 6.3e-46 188.0 244 44.7
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.1e-45 187.2 248 43.1
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.1e-45 187.2 248 43.1
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.1e-45 187.2 248 43.1
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 1.4e-45 186.8 237 45.1
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 1.8e-45 186.4 236 44.5
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.8e-45 186.4 248 42.7
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.8e-45 186.4 236 44.9
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 2.4e-45 186.0 238 44.5
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 4.1e-45 185.3 275 41.8
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 5.4e-45 184.9 248 42.7
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 5.4e-45 184.9 245 44.5
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 5.4e-45 184.9 242 42.6
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.2e-44 183.7 237 43.9
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 2.7e-44 182.6 247 42.9
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 4.5e-44 181.8 236 43.6
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 5.9e-44 181.4 236 43.6
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 7.7e-44 181.0 241 43.6
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.3e-43 180.3 243 43.6
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 1.3e-43 180.3 238 44.1
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 2.9e-43 179.1 238 43.7
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 8.6e-43 177.6 237 42.6
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.2e-42 175.3 236 44.5
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 7.2e-42 174.5 238 42.0
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 3.6e-41 172.2 239 41.4
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 1.0e-40 170.6 239 41.0
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 1.0e-40 170.6 231 44.6
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 4.0e-40 168.7 239 41.0
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 5.2e-40 168.3 242 40.5
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 8.9e-40 167.5 237 40.9
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 2.6e-39 166.0 239 39.7
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 3.4e-39 165.6 241 40.7
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 3.4e-39 165.6 237 40.1
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 1.3e-38 163.7 239 39.7
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 1.7e-38 163.3 237 39.2
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 2.2e-38 162.9 243 39.1
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 2.2e-38 162.9 238 39.9
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 2.2e-38 162.9 240 40.0
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.2e-38 162.9 240 40.0
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 2.2e-38 162.9 240 40.0
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 2.9e-38 162.5 241 40.2
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 3.5e-36 155.6 248 40.7
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 2.9e-35 152.5 257 36.2
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 3.3e-34 149.1 204 45.1
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 3.6e-33 145.6 204 44.6
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 8.9e-32 141.0 206 42.2
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 7.5e-31 137.9 116 59.5
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 4.9e-30 135.2 212 36.3
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 7.0e-29 131.3 222 38.3
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 2.0e-28 129.8 244 35.7
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 7.3e-26 121.3 81 71.6
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 2.1e-25 119.8 244 34.8
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 5.2e-24 115.2 61 93.4
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 3.2e-21 105.9 212 33.0
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 4.1e-21 105.5 237 30.4
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.2e-20 104.0 103 60.2
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 1.6e-20 103.6 241 31.1
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 5.1e-19 98.6 238 31.1
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 1.9e-18 96.7 79 64.6
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 2.5e-18 96.3 188 36.7
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 9.5e-18 94.4 79 60.8
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 8.9e-16 87.8 99 46.5
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.5e-15 87.0 79 59.5
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 1.5e-15 87.0 63 63.5
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 2.1e-12 76.6 54 64.8
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 1.0e-11 74.3 79 49.4
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.2e-09 67.4 152 34.2
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 8.1e-09 64.7 63 54.0


User provided reference genes

Program Settings