Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 2218.7 1225 100.0
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 2141.7 1206 98.4
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1902.9 1207 89.6
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1864.7 1208 87.3
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1810.4 1207 85.6
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 1640.2 991 94.0
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1457.6 987 86.1
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1269.2 1246 60.5
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1267.3 1234 62.5
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1251.9 1264 60.7
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1248.4 1254 61.7
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1248.0 1252 62.1
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1226.8 1247 62.0
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1221.8 1257 58.3
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1220.7 1221 63.4
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1209.9 1255 62.0
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1205.3 1260 60.8
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1199.5 1259 61.0
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1198.3 1250 61.4
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1192.9 1255 60.5
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1183.7 1258 59.9
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1174.5 1226 58.3
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1171.8 1250 58.4
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1169.1 1183 58.8
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1167.1 1251 59.2
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1165.2 1263 60.3
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1160.6 1256 60.3
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1152.9 1244 60.1
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1149.8 1190 61.0
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1147.1 1253 59.1
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1146.3 1244 60.0
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1142.1 1256 56.8
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1135.6 1262 58.1
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1134.0 1243 58.4
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1134.0 1249 56.9
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1130.2 1246 57.1
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1129.4 1237 57.1
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1127.9 1260 58.0
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1125.2 1259 57.8
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1124.8 1262 57.7
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1114.8 1259 56.8
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1113.6 1257 57.4
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1112.8 1227 57.5
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1111.3 1231 58.8
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1110.1 1253 58.4
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1109.7 1246 56.8
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1109.4 1239 57.8
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1108.6 1254 57.9
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1106.7 1198 57.2
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1106.7 1389 53.3
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1101.7 1231 58.1
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1100.9 1252 57.8
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1096.3 1227 57.6
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1088.9 1254 56.1
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1087.0 1256 56.4
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1087.0 1205 56.5
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1086.6 960 64.5
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 0.0e+00 1085.1 1242 56.2
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1080.9 1260 55.6
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1076.6 1211 56.6
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 8.4e-312 1073.9 1245 56.1
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 8.4e-312 1073.9 1252 56.8
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 1.6e-308 1063.1 1251 56.5
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 1.6e-308 1063.1 1251 56.5
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 5.9e-308 1061.2 1255 56.4
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.9e-307 1058.9 1252 56.5
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 8.6e-307 1057.4 1244 54.0
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 4.7e-305 1051.6 1070 61.8
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 5.7e-303 1044.6 1257 55.0
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 5.7e-303 1044.6 1036 61.1
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 5.2e-296 1021.5 1050 62.7
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 3.3e-290 1002.3 1259 55.0
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.1e-289 999.6 941 62.0
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 1.2e-284 983.8 1279 52.9
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 1.4e-269 933.7 1070 56.5
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 9.3e-269 931.0 818 65.2
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 6.2e-257 891.7 1103 51.4
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 1.6e-249 867.1 1241 47.9
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 2.5e-242 843.2 1016 55.1
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 2.2e-217 760.4 769 63.7
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 8.0e-212 741.9 986 51.1
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 1.1e-205 721.5 1115 48.3
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 3.2e-205 719.9 939 53.1
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 3.4e-170 603.6 874 44.6
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.4e-136 491.1 545 54.7
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 6.9e-131 473.0 580 59.3
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 1.7e-105 388.7 848 36.4
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 8.8e-102 376.3 243 79.4
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 1.2e-85 322.8 362 56.6
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.1e-83 314.7 708 37.0
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.4e-75 289.3 158 93.7
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 3.6e-71 274.6 251 57.0
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 2.8e-55 221.9 238 51.3
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 1.2e-53 216.5 252 55.2
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 1.5e-53 216.1 214 54.2
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.8e-44 184.9 261 49.4
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.1e-39 169.1 165 58.2
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.1e-39 169.1 160 56.9
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 8.1e-39 167.2 240 51.2
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 1.7e-33 149.4 1005 24.2
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-32 144.4 258 36.4
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.9e-28 132.1 131 63.4
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.2e-26 126.7 277 37.5
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 3.7e-23 115.2 248 32.3
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 6.2e-23 114.4 102 53.9
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-21 108.2 106 55.7
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 9.9e-21 107.1 183 41.0
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 2.9e-20 105.5 279 28.0
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-14 86.7 64 53.1
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 5.8e-13 81.3 59 66.1
Actinidia09210 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.1e-06 58.9 204 31.4
Migut.C00071 Erythranthe guttata HOM05D001674 ORTHO05D008599 3.1e-06 58.9 71 54.9


User provided reference genes

Program Settings