Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 0.0e+00 1093.2 530 100.0
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 8.0e-310 1066.2 523 98.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 2.7e-302 1041.2 526 96.2
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 1.1e-282 976.1 536 89.7
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.4e-258 896.0 532 83.6
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 2.2e-235 818.9 464 81.9
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.4e-234 816.2 542 74.0
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 2.1e-233 812.4 492 78.3
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.8e-232 809.3 539 72.9
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 3.9e-232 808.1 464 80.4
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.5e-231 806.2 532 72.6
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.5e-231 806.2 535 73.1
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 9.6e-231 803.5 570 70.2
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.6e-230 802.7 539 71.6
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 3.7e-230 801.6 468 78.8
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 6.3e-230 800.8 464 80.6
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 6.9e-229 797.3 544 71.7
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 1.5e-228 796.2 464 78.9
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.0e-228 795.8 537 72.1
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.0e-228 795.8 540 71.3
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 5.9e-228 794.3 539 71.4
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 1.3e-227 793.1 537 71.9
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.7e-227 792.7 538 70.3
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 2.9e-227 792.0 481 77.1
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 3.8e-227 791.6 546 70.9
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 6.5e-227 790.8 535 71.4
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.9e-226 789.3 542 70.7
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 3.2e-226 788.5 542 70.8
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 4.2e-226 788.1 541 70.4
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 5.5e-226 787.7 539 70.1
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 9.3e-226 786.9 477 76.1
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 1.2e-225 786.6 537 71.5
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 1.2e-225 786.6 525 72.2
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 3.6e-225 785.0 464 79.1
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 3.6e-225 785.0 487 74.5
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 7.9e-225 783.9 543 68.1
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 7.9e-225 783.9 541 70.4
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 1.3e-224 783.1 461 78.3
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 1.8e-224 782.7 464 78.7
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 1.8e-224 782.7 542 68.1
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 2.3e-224 782.3 463 78.6
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.3e-224 782.3 549 70.3
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 3.0e-224 781.9 472 76.7
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 5.1e-224 781.2 462 77.3
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 1.5e-223 779.6 469 77.4
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.9e-223 779.2 549 69.9
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 4.3e-223 778.1 463 77.3
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 5.7e-223 777.7 552 69.2
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 9.7e-223 776.9 460 76.7
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 9.7e-223 776.9 528 70.1
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 3.7e-222 775.0 459 78.9
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.8e-222 774.6 461 78.3
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 8.2e-222 773.9 617 63.2
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 1.1e-221 773.5 486 75.3
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 1.1e-221 773.5 509 71.1
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 1.8e-221 772.7 466 75.3
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 1.5e-220 769.6 559 67.1
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 5.9e-220 767.7 461 76.8
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 7.7e-220 767.3 464 75.2
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 3.8e-219 765.0 461 76.4
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 6.5e-219 764.2 464 75.2
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 3.2e-218 761.9 464 75.4
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 5.5e-218 761.1 464 76.5
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 7.2e-218 760.8 463 76.5
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 1.2e-217 760.0 531 68.9
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 3.6e-217 758.4 466 74.2
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 1.4e-216 756.5 479 73.1
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 3.0e-216 755.4 475 72.4
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 3.9e-216 755.0 482 73.0
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.9e-216 755.0 467 76.7
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 6.7e-216 754.2 509 69.7
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 1.1e-215 753.4 476 72.5
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 2.6e-215 752.3 509 72.3
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 3.3e-215 751.9 481 73.0
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 7.4e-215 750.7 491 70.7
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 2.2e-214 749.2 528 67.6
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 2.2e-214 749.2 459 75.2
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 2.2e-214 749.2 609 62.7
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 2.8e-214 748.8 477 72.5
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 2.8e-214 748.8 504 72.2
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 6.3e-214 747.7 504 69.6
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 8.2e-214 747.3 507 69.6
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 2.4e-213 745.7 436 79.6
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 5.3e-213 744.6 461 76.8
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 9.1e-213 743.8 530 66.8
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 9.1e-213 743.8 648 59.3
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 5.9e-212 741.1 475 72.0
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.0e-211 740.3 475 72.0
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.7e-211 739.6 524 70.4
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 8.5e-211 737.3 460 73.7
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.4e-210 736.5 464 73.3
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 4.2e-210 734.9 542 67.7
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 5.5e-210 734.6 461 73.1
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 5.5e-210 734.6 484 73.6
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 6.7e-208 727.6 482 69.9
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 1.5e-207 726.5 460 72.6
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.4e-205 719.2 477 70.4
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 5.3e-205 718.0 434 82.5
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 7.7e-204 714.1 477 70.2
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 1.2e-201 706.8 458 71.6
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 6.1e-201 704.5 421 76.2
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 4.0e-200 701.8 462 71.2
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.1e-197 693.7 421 75.1
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 7.0e-197 691.0 464 73.3
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 6.8e-192 674.5 464 68.1
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.4e-191 672.2 384 86.7
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 2.2e-190 669.5 472 66.9
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 9.1e-189 664.1 444 70.5
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 5.0e-187 658.3 462 65.6
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 8.5e-187 657.5 463 65.9
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 2.2e-182 642.9 421 72.2
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 1.1e-181 640.6 463 65.4
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 2.4e-181 639.4 442 66.3
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 1.2e-180 637.1 466 63.3
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 3.8e-179 632.1 463 64.6
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 1.1e-178 630.6 464 65.9
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 4.4e-175 618.6 469 65.9
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.1e-173 614.0 458 63.1
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 5.4e-173 611.7 454 64.1
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 8.0e-169 597.8 465 62.2
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.4e-165 586.3 348 78.4
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 8.3e-158 561.2 486 57.4
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 5.4e-141 505.4 351 69.2
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 1.1e-128 464.5 516 48.3
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.3e-123 447.6 418 52.4
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 1.2e-119 434.5 269 75.8
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 2.7e-116 423.3 255 76.5
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.3e-115 421.0 316 64.2
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.0e-102 378.3 261 68.2
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 5.9e-95 352.4 326 56.7
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-91 339.3 255 60.4
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 3.8e-86 323.2 227 68.3
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 3.2e-85 320.1 214 65.0
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.2e-79 301.6 242 58.3
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 1.3e-65 255.0 215 64.7
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 3.0e-54 217.2 144 70.1
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 5.0e-54 216.5 162 61.7
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.7e-52 209.9 113 85.8
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 3.4e-42 177.2 101 85.1
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 7.5e-42 176.0 157 59.9
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 2.9e-41 174.1 173 53.8
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.5e-37 161.8 91 78.0
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 4.7e-36 156.8 115 67.0
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.1e-32 145.6 129 58.9
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 1.8e-19 101.7 113 54.0
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.8e-14 85.1 57 59.6
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 1.6e-12 78.6 52 75.0
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 1.6e-12 78.6 52 75.0
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 1.2e-10 72.4 57 59.6
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 1.5e-10 72.0 58 65.5
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 2.7e-07 61.2 51 62.7
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 2.7e-07 61.2 50 68.0


User provided reference genes

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