Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 3.0e-255 885.2 636 100.0
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 3.6e-208 728.8 707 82.3
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 5.3e-191 671.8 714 75.8
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 4.6e-155 552.4 709 70.7
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 7.4e-153 545.0 714 69.3
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 5.0e-141 505.8 725 67.0
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 5.8e-105 386.0 722 57.1
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 5.8e-97 359.4 675 57.6
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.9e-96 356.3 603 62.7
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 3.0e-93 347.1 312 60.3
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.9e-92 344.4 671 56.8
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 2.5e-92 344.0 672 57.3
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 7.3e-92 342.4 618 60.0
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 4.7e-91 339.7 295 59.7
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 4.7e-91 339.7 618 60.2
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 3.1e-90 337.0 670 56.1
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 5.2e-90 336.3 380 52.9
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 1.2e-89 335.1 620 57.9
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 3.8e-88 330.1 675 50.1
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.4e-87 328.2 377 50.1
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 1.9e-87 327.8 708 54.0
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 5.4e-87 326.2 666 55.1
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 7.1e-87 325.9 619 57.7
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 7.1e-87 325.9 368 49.5
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 7.1e-87 325.9 325 55.4
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 9.2e-87 325.5 665 56.8
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.2e-86 325.1 659 54.8
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.2e-86 325.1 677 56.6
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 4.6e-86 323.2 707 55.7
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.0e-86 322.8 346 50.3
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 7.8e-86 322.4 625 57.4
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 7.8e-86 322.4 618 57.9
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.1e-84 318.5 278 57.9
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.1e-84 318.5 348 49.7
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.9e-84 317.8 619 58.3
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.9e-84 317.8 349 50.1
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 3.6e-83 313.5 678 53.7
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 4.7e-83 313.2 357 50.7
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 8.1e-83 312.4 675 55.0
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 4.0e-82 310.1 701 47.9
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 6.9e-82 309.3 685 52.8
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 9.0e-82 308.9 350 49.7
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.5e-81 308.1 316 53.5
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 7.6e-81 305.8 271 57.2
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 7.6e-81 305.8 675 53.8
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 7.6e-81 305.8 278 56.8
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 9.9e-81 305.4 685 53.4
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.3e-80 305.1 372 47.0
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.7e-80 304.7 271 57.2
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 8.4e-80 302.4 305 55.1
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 1.1e-79 302.0 345 50.1
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 1.4e-79 301.6 358 47.5
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 2.4e-79 300.8 347 48.1
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 5.4e-79 299.7 354 47.5
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 9.3e-79 298.9 673 52.9
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.1e-78 297.7 329 50.2
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 4.6e-78 296.6 363 47.7
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 7.8e-78 295.8 704 50.9
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.7e-77 294.7 624 56.1
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 2.3e-77 294.3 700 51.0
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 3.9e-77 293.5 372 48.1
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 3.9e-77 293.5 373 48.5
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 5.1e-77 293.1 547 60.7
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 1.5e-76 291.6 492 72.2
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.9e-76 291.2 630 56.7
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 2.5e-76 290.8 552 58.5
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 3.3e-76 290.4 334 51.2
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 1.4e-74 285.0 278 52.5
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.8e-74 284.6 373 47.5
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 6.9e-74 282.7 371 45.3
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 9.0e-74 282.3 358 46.4
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.2e-73 282.0 381 43.6
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 2.6e-73 280.8 359 46.5
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 4.5e-73 280.0 302 52.0
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 4.5e-73 280.0 569 56.4
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 7.6e-73 279.3 368 45.7
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 2.2e-72 277.7 316 50.0
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 4.9e-72 276.6 245 57.6
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.4e-71 275.0 272 52.2
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 5.4e-71 273.1 272 52.6
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.2e-70 271.9 271 53.5
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 3.5e-70 270.4 278 49.3
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.9e-68 264.6 274 51.1
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 7.4e-68 262.7 278 53.2
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 9.6e-68 262.3 374 42.0
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 9.6e-68 262.3 349 46.1
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.3e-67 261.9 301 49.5
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.4e-66 258.5 272 50.4
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 4.0e-66 256.9 272 49.6
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 4.0e-66 256.9 272 51.1
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 4.0e-66 256.9 674 53.4
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 5.3e-66 256.5 272 50.7
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 6.9e-66 256.1 272 49.3
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 5.8e-65 253.1 319 45.1
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 7.1e-63 246.1 281 45.9
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 4.0e-58 230.3 260 49.2
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 1.4e-55 221.9 502 59.8
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 1.0e-48 199.1 204 47.5
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 2.5e-47 194.5 158 60.1
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 4.8e-43 180.3 154 57.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 1.9e-39 168.3 185 44.3
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 2.2e-32 144.8 122 59.0
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.4e-29 135.6 126 55.6
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 6.3e-27 126.7 299 30.4
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 2.4e-26 124.8 184 34.8
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 9.4e-23 112.8 265 30.6
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 1.0e-21 109.4 325 69.2
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.1e-18 97.8 174 37.9
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 7.0e-18 96.7 61 80.3
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 4.5e-17 94.0 64 71.9
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 7.7e-17 93.2 64 73.4
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.3e-13 81.6 58 70.7
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 6.8e-13 80.1 58 65.5
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 7.5e-12 76.6 82 48.8
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 4.5e-09 67.4 48 62.5
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 5.5e-07 60.5 145 24.8
TPR.G24441 Trifolium pratense HOM05D007098 ORTHO05D008793 1.2e-06 59.3 35 74.3


User provided reference genes

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