Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 1.5e-311 1072.0 530 100.0
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 1.3e-307 1058.9 530 98.9
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 1.1e-306 1055.8 530 98.9
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 8.6e-288 993.0 531 92.8
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.7e-275 952.2 535 88.4
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 7.6e-260 900.2 550 84.2
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 9.6e-255 883.2 532 80.5
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 9.9e-252 873.2 541 78.7
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 2.1e-246 855.5 536 77.8
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 3.1e-245 851.7 530 77.4
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 6.9e-245 850.5 530 76.2
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 7.1e-242 840.5 530 75.8
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 2.7e-241 838.6 529 76.7
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 3.9e-240 834.7 571 72.3
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 3.7e-238 828.2 533 75.4
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 1.8e-237 825.9 531 74.4
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 5.5e-234 814.3 530 75.3
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 9.3e-234 813.5 562 71.5
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 1.2e-233 813.1 528 74.8
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.7e-233 812.0 530 73.6
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 2.7e-233 812.0 537 72.4
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 4.6e-233 811.2 524 74.0
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 6.0e-233 810.8 559 70.8
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 3.0e-232 808.5 530 73.2
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 8.7e-232 807.0 544 72.6
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 4.3e-231 804.7 531 72.7
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 5.7e-231 804.3 527 72.7
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 7.4e-231 803.9 536 72.9
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 7.4e-231 803.9 536 71.8
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 2.8e-230 802.0 532 70.9
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 8.2e-230 800.4 539 77.7
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 4.1e-229 798.1 535 72.7
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 9.0e-229 797.0 526 72.8
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 4.5e-228 794.7 545 71.6
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 1.0e-227 793.5 532 72.0
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 8.5e-227 790.4 528 72.3
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 1.6e-225 786.2 527 74.4
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 3.6e-225 785.0 532 71.8
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 1.8e-224 782.7 529 71.1
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 3.0e-224 781.9 537 70.2
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 5.7e-223 777.7 530 71.7
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 9.7e-223 776.9 525 71.4
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 8.2e-222 773.9 528 69.1
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 5.0e-219 764.6 550 69.8
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 5.0e-219 764.6 541 69.5
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.4e-218 763.1 538 70.3
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.9e-218 762.7 528 69.9
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 3.2e-218 761.9 484 76.4
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 9.4e-218 760.4 528 69.5
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 1.8e-216 756.1 526 69.6
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 2.0e-215 752.7 530 68.1
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 2.2e-214 749.2 527 69.3
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 5.3e-213 744.6 564 66.1
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.2e-212 743.4 526 68.3
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 2.2e-211 739.2 525 68.8
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.2e-211 739.2 503 69.4
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 1.4e-210 736.5 532 67.1
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 1.4e-210 736.5 526 67.5
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 4.2e-210 734.9 534 66.9
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 7.2e-210 734.2 530 68.3
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 4.7e-209 731.5 525 67.8
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 6.1e-209 731.1 483 73.7
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.0e-208 730.3 525 68.0
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 2.3e-208 729.2 525 67.6
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 1.1e-207 726.9 523 67.7
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 4.4e-207 724.9 526 66.9
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 4.4e-207 724.9 526 66.7
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 5.7e-207 724.5 555 64.1
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 7.4e-207 724.2 526 66.9
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 7.4e-207 724.2 489 71.2
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 2.2e-206 722.6 526 66.7
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 3.7e-206 721.8 530 65.5
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 7.0e-205 717.6 531 64.8
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 5.9e-204 714.5 526 66.7
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 2.9e-203 712.2 527 66.2
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 2.0e-199 699.5 605 60.7
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 3.5e-196 688.7 533 64.2
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 1.6e-185 653.3 510 63.7
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 1.1e-181 640.6 528 62.3
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 3.3e-178 629.0 530 58.1
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 4.3e-178 628.6 530 60.0
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 9.2e-173 610.9 592 54.2
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 1.3e-171 607.1 523 55.3
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 5.6e-170 601.7 632 53.3
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 1.3e-166 590.5 531 57.3
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.9e-165 586.6 529 54.3
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.0e-163 580.9 523 54.1
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 5.0e-163 578.6 530 55.5
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 1.6e-156 557.0 528 54.5
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.9e-154 550.1 556 53.6
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 4.6e-148 528.9 535 50.5
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 5.1e-147 525.4 316 76.3
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 2.0e-143 513.5 301 77.4
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 9.6e-138 494.6 524 46.8
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 6.9e-136 488.4 301 75.1
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 9.6e-130 468.0 300 71.0
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 7.6e-127 458.4 558 46.6
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 6.0e-124 448.7 563 47.4
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 3.1e-120 436.4 446 53.6
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 5.0e-110 402.5 244 77.5
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.7e-102 377.5 300 63.7
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 1.4e-96 357.8 624 33.8
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.9e-85 320.9 371 48.2
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 1.5e-82 311.2 577 34.3
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 1.0e-70 271.9 211 64.5
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 2.8e-68 263.8 211 65.9
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 2.8e-68 263.8 569 33.2
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 6.8e-67 259.2 211 64.9
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.4e-58 229.9 206 56.8
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.7e-57 228.0 206 56.3
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.7e-57 228.0 206 56.3
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 6.6e-54 216.1 170 61.2
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.2e-49 201.1 104 86.5
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 2.1e-47 194.5 108 80.6
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 1.5e-37 161.8 184 47.3
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 4.9e-33 146.7 85 76.5
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 7.1e-32 142.9 131 58.0
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 4.0e-27 127.1 325 29.5
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 3.8e-17 94.0 404 24.0
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.2e-15 89.0 110 53.6
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 4.6e-15 87.0 48 79.2
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 1.1e-13 82.4 53 73.6
CAN.G93.25 Capsicum annuum HOM05D000544 ORTHO05D000137 2.0e-10 71.6 41 80.5
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 3.8e-09 67.4 33 84.8
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 3.8e-09 67.4 33 84.8
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 3.8e-09 67.4 33 84.8
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 3.8e-09 67.4 33 84.8
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 1.1e-08 65.9 33 81.8
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 1.4e-08 65.5 113 38.1
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 9.3e-08 62.8 57 56.1
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 1.2e-07 62.4 57 56.1
Actinidia31560 Actinidia chinensis HOM05D006175 ORTHO05D008081 6.0e-07 60.1 60 58.3


User provided reference genes

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