Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 1.4e-193 679.5 344 100.0
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 4.8e-191 671.0 344 98.8
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 8.6e-188 660.2 344 97.1
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 4.9e-183 644.4 344 95.3
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 5.0e-180 634.4 344 92.4
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 4.7e-178 627.9 344 92.7
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 5.0e-172 607.8 330 92.1
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 6.8e-161 570.9 344 83.4
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.4e-160 568.2 344 82.3
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.4e-160 568.2 344 82.3
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 7.6e-160 567.4 344 83.1
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.7e-159 566.2 344 82.8
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 8.3e-159 563.9 344 83.1
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.1e-158 563.5 344 82.3
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.1e-158 563.5 349 80.2
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.4e-158 563.1 344 82.3
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 9.2e-158 560.5 344 82.0
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 9.2e-158 560.5 347 81.3
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 2.7e-157 558.9 342 82.7
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 3.5e-157 558.5 347 80.7
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 3.0e-156 555.4 346 81.2
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 3.0e-156 555.4 344 81.1
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 2.5e-155 552.4 346 80.3
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 4.3e-155 551.6 344 82.0
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 5.6e-155 551.2 348 79.3
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 5.6e-155 551.2 344 80.8
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 7.3e-155 550.8 331 81.3
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.2e-154 550.1 345 80.0
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 1.2e-154 550.1 348 79.0
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 1.2e-154 550.1 344 79.9
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 2.1e-154 549.3 344 80.8
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 2.1e-154 549.3 351 78.3
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.8e-154 548.9 346 80.1
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 3.6e-154 548.5 346 79.8
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.1e-153 547.0 355 78.0
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 2.4e-153 545.8 341 80.4
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 2.4e-153 545.8 353 78.8
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 6.8e-153 544.3 344 78.8
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.2e-152 543.5 346 79.2
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 2.0e-152 542.7 345 78.3
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 2.6e-152 542.3 349 78.8
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 9.9e-152 540.4 351 77.2
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 1.3e-151 540.0 346 78.6
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.3e-151 540.0 346 77.7
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.7e-151 539.7 342 78.9
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 2.9e-151 538.9 323 81.4
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 2.9e-151 538.9 326 81.9
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 4.9e-151 538.1 353 77.6
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 4.9e-151 538.1 350 78.6
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 6.4e-151 537.7 348 76.4
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 6.4e-151 537.7 343 77.8
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 6.4e-151 537.7 344 78.2
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 6.4e-151 537.7 344 77.6
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 8.4e-151 537.3 344 77.3
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 8.4e-151 537.3 342 78.9
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 8.4e-151 537.3 345 78.0
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 8.4e-151 537.3 348 76.4
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.4e-150 536.6 344 78.2
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 1.4e-150 536.6 344 76.2
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 1.4e-150 536.6 344 76.2
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 1.4e-150 536.6 344 76.2
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 1.4e-150 536.6 351 76.9
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.4e-150 536.6 346 78.0
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 1.9e-150 536.2 348 76.1
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.4e-150 535.8 345 77.7
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 3.2e-150 535.4 351 75.2
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.2e-150 535.0 348 77.9
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 4.2e-150 535.0 353 77.6
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 7.1e-150 534.3 345 77.7
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 9.3e-150 533.9 344 77.0
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 2.1e-149 532.7 351 74.6
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.7e-148 529.6 353 74.2
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 2.3e-148 529.3 318 82.7
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 3.9e-148 528.5 344 76.2
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 3.9e-148 528.5 344 76.2
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 5.1e-148 528.1 349 74.8
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 5.1e-148 528.1 372 72.8
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 6.6e-148 527.7 354 74.0
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 8.7e-148 527.3 344 76.2
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 1.5e-147 526.6 354 74.6
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 1.9e-147 526.2 345 78.0
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 3.3e-147 525.4 357 74.8
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 4.3e-147 525.0 345 76.5
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 4.3e-147 525.0 344 77.0
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 5.6e-147 524.6 348 73.9
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 5.6e-147 524.6 348 73.9
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 7.3e-147 524.2 357 74.8
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 7.3e-147 524.2 344 77.6
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 9.6e-147 523.9 357 74.5
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 9.6e-147 523.9 359 74.7
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 1.6e-146 523.1 348 73.9
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 2.8e-146 522.3 346 75.1
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 8.1e-146 520.8 347 77.2
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 1.4e-145 520.0 355 73.2
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 1.4e-145 520.0 347 77.2
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 1.4e-145 520.0 328 79.6
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 1.8e-145 519.6 337 77.2
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.8e-145 519.6 344 75.0
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 2.4e-145 519.2 347 76.9
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.0e-144 516.2 344 76.5
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 2.0e-144 516.2 363 73.0
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 4.9e-143 511.5 326 79.1
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 2.1e-141 506.1 346 73.4
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 6.0e-141 504.6 346 74.3
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 6.0e-141 504.6 323 77.4
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 1.3e-140 503.4 346 74.3
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 8.7e-140 500.7 344 72.7
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 9.6e-139 497.3 344 75.3
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 2.1e-138 496.1 347 72.3
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 1.4e-137 493.4 367 70.0
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 4.0e-137 491.9 341 74.5
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 1.7e-135 486.5 344 70.9
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 6.4e-135 484.6 348 70.4
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 1.4e-134 483.4 388 67.8
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 1.2e-133 480.3 347 69.7
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 1.2e-133 480.3 347 69.7
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 1.6e-133 479.9 344 72.7
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.1e-133 479.6 302 78.8
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.3e-132 476.9 347 69.7
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.8e-130 469.2 292 80.1
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.8e-130 469.2 292 80.1
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 4.8e-130 468.4 345 68.4
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.9e-129 464.5 345 71.9
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 2.0e-128 463.0 344 69.8
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 2.6e-128 462.6 344 69.8
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 1.0e-127 460.7 348 66.7
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 2.2e-127 459.5 348 66.7
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 3.8e-127 458.8 348 65.5
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.1e-126 457.2 344 68.3
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 9.3e-126 454.1 320 69.1
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 7.9e-125 451.1 324 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.9e-124 448.7 320 68.8
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 5.0e-119 431.8 319 66.1
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 8.7e-116 421.0 274 76.3
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.8e-114 415.2 319 63.9
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.1e-113 412.1 327 63.0
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 3.4e-112 409.1 332 61.4
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 1.1e-105 387.5 231 81.4
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 9.4e-102 374.4 255 71.4
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 7.4e-99 364.8 229 78.2
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 2.9e-95 352.8 209 81.8
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 7.2e-86 321.6 298 56.7
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 4.0e-84 315.8 215 74.0
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 7.5e-83 311.6 248 66.9
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.9e-70 270.4 185 76.2
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.7e-66 257.3 183 67.2
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.7e-66 257.3 183 67.2
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.6e-61 239.6 165 70.3
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 6.4e-58 228.8 131 83.2
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 8.3e-58 228.4 123 90.2
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 3.5e-56 223.0 140 76.4
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.8e-53 213.4 122 80.3
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 3.9e-47 193.0 164 61.6
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 3.3e-46 189.9 164 61.6
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 4.0e-44 183.0 164 60.4
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 8.1e-37 158.7 129 58.9
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 3.0e-31 140.2 118 67.8
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 5.8e-27 125.9 70 87.1
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 9.9e-27 125.2 177 44.1
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 1.3e-26 124.8 92 69.6
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 5.4e-25 119.4 92 68.5
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 5.3e-20 102.8 78 64.1
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 8.4e-18 95.5 71 66.2
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 5.5e-17 92.8 118 43.2
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 2.3e-15 87.4 78 56.4
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.1e-12 78.6 146 39.0
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 4.2e-09 66.6 42 81.0
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 7.1e-09 65.9 51 64.7
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 1.3e-07 61.6 40 65.0


User provided reference genes

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