Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 2.2e-274 949.5 1066 100.0
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 3.6e-261 905.6 1066 96.8
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 4.9e-250 868.6 1066 94.6
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 4.5e-211 739.2 1064 86.7
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 5.5e-209 732.3 1064 86.5
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 1.8e-191 674.1 1065 85.9
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 4.0e-191 672.9 1067 85.8
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 1.2e-152 545.0 1060 73.5
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 4.1e-148 530.0 1071 72.0
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 1.6e-147 528.1 751 68.8
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 2.2e-141 507.7 1091 73.1
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 2.7e-139 500.7 1065 70.7
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 6.0e-139 499.6 755 53.9
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 7.8e-139 499.2 1075 73.5
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 2.1e-136 491.1 762 68.8
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 7.6e-134 482.6 754 61.5
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 1.4e-132 478.4 1064 66.1
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 1.0e-130 472.2 750 71.7
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 1.1e-127 462.2 750 61.5
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 2.0e-126 458.0 754 64.9
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 2.0e-126 458.0 1064 75.0
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 2.6e-126 457.6 752 55.2
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 3.4e-126 457.2 751 67.4
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 4.5e-126 456.8 759 63.9
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 4.5e-126 456.8 751 67.2
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 5.8e-126 456.4 749 69.4
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 5.8e-126 456.4 1064 76.4
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 1.7e-125 454.9 751 67.2
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 2.9e-125 454.1 749 64.1
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 3.8e-125 453.8 1060 71.2
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 1.1e-124 452.2 716 59.4
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 1.9e-124 451.4 746 66.8
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 4.2e-124 450.3 792 65.0
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 1.6e-123 448.4 755 61.6
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 3.9e-122 443.7 794 64.7
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 4.3e-121 440.3 751 59.4
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 5.6e-121 439.9 751 65.5
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 7.4e-121 439.5 1031 68.0
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 1.6e-120 438.3 753 65.6
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 5.3e-119 433.3 762 56.6
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 1.5e-118 431.8 723 68.2
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 5.8e-118 429.9 1068 62.0
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 7.6e-118 429.5 767 59.1
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 7.6e-118 429.5 759 61.1
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 9.9e-118 429.1 744 63.4
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 8.4e-117 426.0 753 70.0
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 4.2e-116 423.7 751 59.7
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 2.7e-115 421.0 755 61.2
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 3.5e-115 420.6 762 63.4
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 1.3e-114 418.7 716 67.5
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 6.7e-114 416.4 750 63.6
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 1.5e-113 415.2 750 63.7
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 2.5e-113 414.5 762 69.6
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 3.3e-113 414.1 751 58.1
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 4.3e-113 413.7 752 67.6
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 1.3e-112 412.1 757 55.1
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 4.8e-112 410.2 751 60.1
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 6.2e-112 409.8 766 55.7
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 8.2e-112 409.5 757 65.7
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 5.3e-111 406.8 728 67.9
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 3.4e-110 404.1 750 62.8
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 7.6e-110 402.9 754 59.3
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 4.9e-109 400.2 751 59.4
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 3.2e-108 397.5 752 60.5
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 2.1e-107 394.8 754 53.6
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 1.8e-106 391.7 755 62.0
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 4.3e-105 387.1 754 63.4
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 9.7e-105 386.0 1070 67.7
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 1.3e-104 385.6 756 61.8
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 2.0e-102 378.3 749 59.5
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 1.0e-101 375.9 749 59.4
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 2.2e-101 374.8 749 55.5
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 6.5e-101 373.2 851 57.3
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 3.2e-100 370.9 752 59.2
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 4.2e-100 370.5 749 62.2
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 1.4e-98 365.5 752 58.8
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 3.0e-98 364.4 749 58.6
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 6.7e-98 363.2 751 59.0
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 9.7e-97 359.4 751 58.5
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 1.3e-93 349.0 759 66.4
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 2.2e-93 348.2 234 77.4
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 6.3e-80 303.5 703 52.9
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 1.7e-64 252.3 644 60.9
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 6.1e-59 233.8 275 45.5
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 1.4e-58 232.6 273 48.0
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 2.0e-57 228.8 124 88.7
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 3.1e-55 221.5 274 45.3
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 4.1e-55 221.1 707 54.7
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 5.4e-55 220.7 159 66.7
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 3.1e-50 204.9 277 41.9
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 1.2e-49 203.0 273 43.6
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 6.2e-43 180.6 194 53.1
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 1.6e-38 166.0 264 37.9
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 7.8e-38 163.7 266 37.6
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 1.5e-36 159.5 182 47.8
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 5.8e-33 147.5 197 44.2
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 6.4e-32 144.1 273 33.7
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 3.8e-24 118.2 164 42.7
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 8.4e-24 117.1 274 29.9
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 5.4e-23 114.4 92 62.0
vmacro22172 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.0e-21 110.2 89 62.9
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 1.4e-18 99.8 90 56.7
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 7.1e-15 87.4 51 78.4
Lalb_Chr13g0294621 Lupinus albus HOM05D006877 ORTHO05D008735 6.6e-13 80.9 73 57.5
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 6.2e-11 74.3 140 31.4
VMungo0251G3229 Vigna mungo HOM05D006877 ORTHO05D008735 1.4e-10 73.2 57 66.7
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 1.8e-10 72.8 88 39.8
TAR636G2077 Trochodendron aralioides HOM05D006877 ORTHO05D008735 4.5e-09 68.2 53 64.2
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 6.4e-08 64.3 81 39.5
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 6.4e-08 64.3 80 41.2
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 1.1e-07 63.5 89 34.8
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 1.4e-07 63.2 87 36.8
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 1.4e-07 63.2 85 37.6
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 4.2e-07 61.6 78 37.2
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 4.2e-07 61.6 91 36.3
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 7.1e-07 60.8 85 35.3
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 7.1e-07 60.8 85 35.3
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 7.1e-07 60.8 85 35.3
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 7.1e-07 60.8 81 37.0
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 7.1e-07 60.8 88 35.2
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 9.3e-07 60.5 85 35.3
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 9.3e-07 60.5 81 38.3
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 1.2e-06 60.1 85 35.3
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.2e-06 60.1 85 32.9
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 1.2e-06 60.1 85 36.5
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.6e-06 59.7 85 34.1
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 3.5e-06 58.5 85 35.3
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 4.6e-06 58.2 91 37.4
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 4.6e-06 58.2 114 30.7
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 4.6e-06 58.2 85 35.3
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 6.0e-06 57.8 91 33.0
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 6.0e-06 57.8 212 24.5
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 6.0e-06 57.8 81 35.8
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 6.0e-06 57.8 85 34.1
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 6.0e-06 57.8 78 37.2
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 6.0e-06 57.8 81 37.0
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 6.0e-06 57.8 81 37.0
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 6.0e-06 57.8 111 28.8
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 7.9e-06 57.4 157 27.4


User provided reference genes

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