Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g096303.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 2.5e-62 241.9 120 100.0
Solyc10g055427.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 7.1e-57 223.8 119 92.4
Solyc09g072730.2 Solanum lycopersicum HOM05D009408 ORTHO05D000309 1.6e-56 222.6 119 92.4
Solyc12g062733.2 Solanum lycopersicum HOM05D009408 ORTHO05D000309 6.7e-55 217.2 119 90.8
PGSC0003DMG400008721 Solanum tuberosum HOM05D009408 ORTHO05D000309 3.1e-52 208.4 119 84.9
PGSC0003DMG400041825 Solanum tuberosum HOM05D009408 ORTHO05D000309 9.0e-52 206.8 119 84.0
PGSC0003DMG400029733 Solanum tuberosum HOM05D009408 ORTHO05D000309 5.9e-51 204.1 119 84.0
Solyc10g080784.1 Solanum lycopersicum HOM05D008169 ORTHO05D004497 2.5e-46 188.7 107 84.1
PGSC0003DMG400014126 Solanum tuberosum HOM05D009408 ORTHO05D000309 3.4e-43 178.3 106 81.1
Solyc08g150132.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 1.8e-39 166.0 91 87.9
PGSC0003DMG400044631 Solanum tuberosum HOM05D009408 ORTHO05D004497 1.8e-31 139.4 98 74.5
PGSC0003DMG400044971 Solanum tuberosum HOM05D009408 ORTHO05D004497 8.8e-23 110.5 124 54.8
CAN.G275.3 Capsicum annuum HOM05D009408 ORTHO05D004497 3.1e-20 102.1 125 44.0
CAN.G176.8 Capsicum annuum HOM05D009408 ORTHO05D000309 1.2e-19 100.1 99 51.5
CAN.G548.7 Capsicum annuum HOM05D009408 ORTHO05D000309 1.2e-19 100.1 97 51.5
CAN.G1343.17 Capsicum annuum HOM05D009408 ORTHO05D000309 1.6e-19 99.8 125 43.2
CAN.G1801.2 Capsicum annuum HOM05D009408 ORTHO05D000309 2.0e-19 99.4 125 44.0
CAN.G1459.18 Capsicum annuum HOM05D009408 ORTHO05D000309 5.9e-19 97.8 89 55.1
CAN.G98.25 Capsicum annuum HOM05D009408 ORTHO05D000309 7.7e-19 97.4 94 51.1
CAN.G637.19 Capsicum annuum HOM05D009408 ORTHO05D004497 3.8e-18 95.1 125 43.2
CAN.G490.13 Capsicum annuum HOM05D009408 ORTHO05D000309 8.5e-18 94.0 96 49.0
CAN.G1275.6 Capsicum annuum HOM05D009408 ORTHO05D000309 3.2e-17 92.0 88 53.4
CAN.G685.20 Capsicum annuum HOM05D009408 ORTHO05D000309 3.2e-17 92.0 88 53.4
CAN.G1014.58 Capsicum annuum HOM05D009408 ORTHO05D000309 5.5e-17 91.3 92 48.9
CAN.G781.1 Capsicum annuum HOM05D009408 ORTHO05D000309 2.7e-16 89.0 85 50.6
CAN.G11.43 Capsicum annuum HOM05D009408 ORTHO05D000309 8.0e-16 87.4 120 40.0
CAN.G100.78 Capsicum annuum HOM05D009408 ORTHO05D004497 2.3e-15 85.9 89 50.6
CAN.G1538.14 Capsicum annuum HOM05D009408 ORTHO05D004497 1.1e-12 77.0 93 44.1
Nitab4.5_0001839g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.4e-12 76.6 80 47.5
Nitab4.5_0003518g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.8e-12 76.3 80 47.5
CAN.G410.3 Capsicum annuum HOM05D009408 ORTHO05D004497 4.1e-12 75.1 83 48.2
Nitab4.5_0001288g0050 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.4e-12 74.7 81 45.7
Nitab4.5_0029094g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.4e-12 74.7 81 49.4
Nitab4.5_0001839g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 7.0e-12 74.3 85 43.5
Nitab4.5_0011664g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.2e-11 73.6 81 48.1
Nitab4.5_0029284g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.5e-11 71.6 103 39.8
Nitab4.5_0010408g0040 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.9e-11 71.2 92 42.4
Nitab4.5_0005085g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 7.7e-11 70.9 64 48.4
Nitab4.5_0015725g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.0e-10 68.2 52 53.8
Nitab4.5_0009037g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 6.6e-10 67.8 78 48.7
Nitab4.5_0005772g0100 Nicotiana tabacum HOM05D004040 ORTHO05D000309 8.6e-10 67.4 80 42.5
Nitab4.5_0013592g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.1e-09 67.0 77 44.2
Solyc12g150117.1 Solanum lycopersicum HOM05D004040 ORTHO05D000309 1.1e-09 67.0 67 47.8
Nitab4.5_0005741g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.5e-09 66.6 85 41.2
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.9e-09 66.2 102 37.3
Nitab4.5_0007976g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.9e-09 66.2 46 54.3
Nitab4.5_0010257g0020 Nicotiana tabacum HOM05D009408 ORTHO05D000309 1.9e-09 66.2 124 34.7
Nitab4.5_0022073g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.9e-09 66.2 78 48.7
Nitab4.5_0008054g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.5e-09 65.9 78 44.9
Nitab4.5_0008946g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.5e-09 65.9 77 44.2
Nitab4.5_0010359g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 3.3e-09 65.5 102 42.2
Nitab4.5_0001370g0070 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.2e-09 65.1 92 40.2
CAN.G767.55 Capsicum annuum HOM05D011038 ORTHO05D004172 9.5e-09 63.9 116 36.2
CAN.G1005.18 Capsicum annuum HOM05D011038 ORTHO05D004172 1.2e-08 63.5 90 40.0
Hma1.2p1_0470F.1_g159220 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.6e-08 63.2 104 37.5
Nitab4.5_0000529g0090 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.1e-08 62.8 46 52.2
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.8e-08 62.4 77 42.9
Solyc05g017863.1 Solanum lycopersicum HOM05D004040 ORTHO05D000309 2.8e-08 62.4 90 41.1
Sopen00g004430 Solanum pennellii HOM05D000679 ORTHO05D000482 2.8e-08 62.4 53 50.9
Nitab4.5_0000337g0240 Nicotiana tabacum HOM05D009794 ORTHO05D000309 3.6e-08 62.0 46 52.2
PGSC0003DMG402006646 Solanum tuberosum HOM05D009408 ORTHO05D000309 3.6e-08 62.0 44 56.8
Nitab4.5_0004970g0050 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.7e-08 61.6 77 42.9
Nitab4.5_0000381g0280 Nicotiana tabacum HOM05D009794 ORTHO05D000309 6.1e-08 61.2 51 45.1
CAN.G162.74 Capsicum annuum HOM05D004040 ORTHO05D000309 8.0e-08 60.8 87 42.5
Nitab4.5_0008271g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 8.0e-08 60.8 80 41.2
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 1.0e-07 60.5 63 42.9
Nitab4.5_0001759g0090 Nicotiana tabacum HOM05D009794 ORTHO05D000309 1.0e-07 60.5 46 50.0
Nitab4.5_0002918g0110 Nicotiana tabacum HOM05D009794 ORTHO05D000309 1.0e-07 60.5 46 52.2
Nitab4.5_0013705g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.0e-07 60.5 76 43.4
Nitab4.5_0004703g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.4e-07 60.1 51 51.0
DCAR_001866 Daucus carota HOM05D001383 ORTHO05D000309 1.8e-07 59.7 105 35.2
DCAR_006044 Daucus carota HOM05D001383 ORTHO05D000309 1.8e-07 59.7 105 35.2
DCAR_029331 Daucus carota HOM05D001383 ORTHO05D000309 1.8e-07 59.7 95 38.9
Hma1.2p1_1041F.1_g251030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.8e-07 59.7 50 52.0
Lsat_1_v5_gn_4_63641 Lactuca sativa HOM05D010091 ORTHO05D012356 1.8e-07 59.7 46 52.2
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 2.3e-07 59.3 42 54.8
CAN.G1288.6 Capsicum annuum HOM05D004040 ORTHO05D000309 2.3e-07 59.3 87 42.5
Lsat_1_v5_gn_0_12581 Lactuca sativa HOM05D010091 ORTHO05D012356 2.3e-07 59.3 46 52.2
Lsat_1_v5_gn_3_18240 Lactuca sativa HOM05D010091 ORTHO05D012356 2.3e-07 59.3 46 52.2
Lsat_1_v5_gn_7_32160 Lactuca sativa HOM05D010091 ORTHO05D012356 2.3e-07 59.3 46 52.2
Lsat_1_v5_gn_7_32200 Lactuca sativa HOM05D010091 ORTHO05D012356 2.3e-07 59.3 46 52.2
Nitab4.5_0000128g0210 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.3e-07 59.3 46 50.0
Nitab4.5_0000682g0010 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.3e-07 59.3 46 50.0
Nitab4.5_0016516g0010 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.3e-07 59.3 43 53.5
CAN.G3396.2 Capsicum annuum HOM05D011038 ORTHO05D004172 3.0e-07 58.9 99 37.4
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.0e-07 58.9 97 36.1
Nitab4.5_0000141g0260 Nicotiana tabacum HOM05D009794 ORTHO05D000309 3.0e-07 58.9 46 47.8
Nitab4.5_0000299g0230 Nicotiana tabacum HOM05D009794 ORTHO05D000309 3.0e-07 58.9 46 50.0
Eucgr.H02341 Eucalyptus grandis HOM05D001383 ORTHO05D000309 4.0e-07 58.5 102 33.3
Hma1.2p1_1407F.1_g281470 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.0e-07 58.5 76 42.1
Nitab4.5_0002330g0150 Nicotiana tabacum HOM05D009794 ORTHO05D000309 4.0e-07 58.5 46 50.0
Actinidia16536 Actinidia chinensis HOM05D001383 ORTHO05D000309 5.2e-07 58.2 45 51.1
CAN.G588.57 Capsicum annuum HOM05D011038 ORTHO05D004172 5.2e-07 58.2 109 34.9
Nitab4.5_0003726g0110 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.2e-07 58.2 42 59.5
CAN.G65.20 Capsicum annuum HOM05D011038 ORTHO05D004172 6.8e-07 57.8 84 38.1
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.8e-07 57.8 98 35.7
Nitab4.5_0006039g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 6.8e-07 57.8 42 59.5
Nitab4.5_0011105g0020 Nicotiana tabacum HOM05D009794 ORTHO05D000309 6.8e-07 57.8 46 50.0
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 8.9e-07 57.4 63 42.9
Dinv24546 Davidia involucrata HOM05D001383 ORTHO05D000309 8.9e-07 57.4 76 42.1
Nitab4.5_0000463g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 8.9e-07 57.4 73 45.2
Nitab4.5_0003883g0040 Nicotiana tabacum HOM05D004040 ORTHO05D000309 8.9e-07 57.4 53 50.9
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.2e-06 57.0 63 39.7
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.2e-06 57.0 63 39.7
Nitab4.5_0004033g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.2e-06 57.0 103 35.0
Peaxi162Scf00756g00016 Petunia axillaris HOM05D001383 ORTHO05D000309 1.2e-06 57.0 49 49.0
CAN.G298.38 Capsicum annuum HOM05D004040 ORTHO05D000309 1.5e-06 56.6 43 53.5
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.5e-06 56.6 103 33.0
Lsat_1_v5_gn_1_98500 Lactuca sativa HOM05D010091 ORTHO05D012356 1.5e-06 56.6 45 51.1
Lsat_1_v5_gn_3_56760 Lactuca sativa HOM05D010091 ORTHO05D000529 1.5e-06 56.6 45 51.1
SGA_v2.0_scaffold199G41207 Striga asiatica HOM05D011630 ORTHO05D014269 1.5e-06 56.6 92 35.9
SGA_v2.0_scaffold22G09678 Striga asiatica HOM05D011630 ORTHO05D014269 1.5e-06 56.6 111 30.6
DCAR_001034 Daucus carota HOM05D001383 ORTHO05D000309 2.0e-06 56.2 113 33.6
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 2.0e-06 56.2 42 52.4
Lsat_1_v5_gn_9_80080 Lactuca sativa HOM05D010091 ORTHO05D012356 2.0e-06 56.2 45 51.1
Nitab4.5_0006105g0050 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.0e-06 56.2 75 33.3
Nitab4.5_0008808g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.0e-06 56.2 73 45.2
Peaxi162Scf01302g00024 Petunia axillaris HOM05D001383 ORTHO05D000309 2.0e-06 56.2 50 42.0
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.6e-06 55.8 60 43.3
Nitab4.5_0000073g0140 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.6e-06 55.8 46 47.8
Nitab4.5_0009435g0010 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.6e-06 55.8 37 56.8
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 3.4e-06 55.5 63 39.7
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 3.4e-06 55.5 63 39.7
CAN.G806.9 Capsicum annuum HOM05D011038 ORTHO05D004172 3.4e-06 55.5 98 33.7
Hma1.2p1_1219F.1_g267960 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.4e-06 55.5 87 34.5
Lsat_1_v5_gn_2_16641 Lactuca sativa HOM05D009585 ORTHO05D000309 3.4e-06 55.5 59 44.1
Oeu043460.1 Olea europaea HOM05D001383 ORTHO05D000309 3.4e-06 55.5 85 38.8
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 3.4e-06 55.5 42 52.4
SGA_v2.0_scaffold217G42455 Striga asiatica HOM05D011630 ORTHO05D014269 3.4e-06 55.5 111 30.6
SGA_v2.0_scaffold263G45986 Striga asiatica HOM05D011630 ORTHO05D014269 3.4e-06 55.5 111 30.6
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.4e-06 55.5 54 48.1
Nitab4.5_0000270g0070 Nicotiana tabacum HOM05D009794 ORTHO05D000309 4.4e-06 55.1 46 45.7
Peaxi162Scf00171g00022 Petunia axillaris HOM05D001383 ORTHO05D000309 4.4e-06 55.1 47 42.6
Peaxi162Scf00699g00025 Petunia axillaris HOM05D001383 ORTHO05D000309 4.4e-06 55.1 47 42.6
Peaxi162Scf00795g00012 Petunia axillaris HOM05D001383 ORTHO05D000309 4.4e-06 55.1 47 42.6
Peaxi162Scf00990g00010 Petunia axillaris HOM05D001383 ORTHO05D000309 4.4e-06 55.1 47 42.6
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 4.4e-06 55.1 42 52.4
VMungo0331G0323 Vigna mungo HOM05D008573 ORTHO05D009911 4.4e-06 55.1 90 37.8
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 4.4e-06 55.1 44 52.3
CAN.G1995.1 Capsicum annuum HOM05D011038 ORTHO05D004172 5.7e-06 54.7 99 35.4
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 5.7e-06 54.7 60 41.7
Hma1.2p1_0283F.1_g113450 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.7e-06 54.7 42 50.0
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 5.7e-06 54.7 51 45.1
Nitab4.5_0001203g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.7e-06 54.7 51 43.1
Nitab4.5_0004685g0020 Nicotiana tabacum HOM05D009794 ORTHO05D000309 5.7e-06 54.7 46 47.8
SGA_v2.0_scaffold3G01575 Striga asiatica HOM05D011630 ORTHO05D014269 5.7e-06 54.7 77 35.1
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 7.5e-06 54.3 48 50.0
CiPaw.05G086500 Carya illinoinensis HOM05D009850 ORTHO05D011981 7.5e-06 54.3 48 50.0
Eucgr.H02671 Eucalyptus grandis HOM05D001383 ORTHO05D000309 7.5e-06 54.3 106 30.2
Nitab4.5_0002980g0110 Nicotiana tabacum HOM05D009794 ORTHO05D000309 7.5e-06 54.3 43 51.2
Peaxi162Scf00225g00101 Petunia axillaris HOM05D001383 ORTHO05D000309 7.5e-06 54.3 47 42.6
Peaxi162Scf00562g00008 Petunia axillaris HOM05D004040 ORTHO05D000309 7.5e-06 54.3 57 42.1
Peaxi162Scf00914g00516 Petunia axillaris HOM05D004040 ORTHO05D000309 7.5e-06 54.3 107 34.6
Peaxi162Scf01167g00009 Petunia axillaris HOM05D004040 ORTHO05D000309 7.5e-06 54.3 57 42.1
SGA_v2.0_scaffold2G00884 Striga asiatica HOM05D011630 ORTHO05D014269 7.5e-06 54.3 111 30.6
SGA_v2.0_scaffold53G19282 Striga asiatica HOM05D011630 ORTHO05D014269 7.5e-06 54.3 111 30.6
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 7.5e-06 54.3 42 52.4
CAN.G200.12 Capsicum annuum HOM05D004040 ORTHO05D000309 9.8e-06 53.9 43 53.5
Dinv14680 Davidia involucrata HOM05D008126 ORTHO05D000309 9.8e-06 53.9 43 55.8
Eucgr.L01799 Eucalyptus grandis HOM05D001383 ORTHO05D000309 9.8e-06 53.9 80 32.5
Peaxi162Scf00723g00110 Petunia axillaris HOM05D001383 ORTHO05D000309 9.8e-06 53.9 49 46.9
SGA_v2.0_scaffold267G46184 Striga asiatica HOM05D035478 ORTHO05D000309 9.8e-06 53.9 114 31.6
SGA_v2.0_scaffold354G49733 Striga asiatica HOM05D011630 ORTHO05D014269 9.8e-06 53.9 111 30.6


User provided reference genes

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