Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.6e-45 184.9 85 100.0
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.2e-44 181.8 85 96.5
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.8e-44 181.0 85 96.5
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 4.9e-44 180.6 85 95.3
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 6.4e-44 180.3 85 95.3
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.7e-42 174.9 85 92.9
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.8e-42 173.3 85 90.6
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.3e-41 171.8 85 89.4
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 5.1e-41 170.6 85 90.6
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-39 166.0 83 90.4
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 2.8e-39 164.9 85 84.7
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 4.8e-39 164.1 77 94.8
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 6.2e-39 163.7 85 83.5
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 2.2e-36 155.2 82 90.2
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.0e-33 144.8 69 94.2
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.6e-31 139.0 85 71.8
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.8e-30 135.6 83 71.1
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 2.4e-30 135.2 85 69.4
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 2.4e-30 135.2 85 68.2
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 9.0e-30 133.3 85 69.4
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.5e-29 132.5 85 67.1
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 5.8e-29 130.6 85 64.7
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 9.9e-29 129.8 85 65.9
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 2.9e-28 128.3 85 67.1
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.4e-27 125.2 86 67.4
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.4e-27 125.2 86 66.3
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 4.2e-27 124.4 85 63.5
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 7.1e-27 123.6 85 62.4
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 7.1e-27 123.6 85 65.9
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 2.1e-26 122.1 85 62.4
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.1e-26 122.1 85 62.4
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.7e-26 121.7 85 61.2
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.7e-26 121.7 84 60.7
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 6.0e-26 120.6 85 63.5
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 7.9e-26 120.2 72 70.8
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.3e-25 119.4 85 58.8
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.3e-25 119.4 75 65.3
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.8e-25 119.0 85 61.2
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.3e-25 118.6 81 65.4
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.0e-25 118.2 81 66.7
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 5.1e-25 117.5 85 60.0
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 6.7e-25 117.1 85 61.2
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.1e-24 116.3 85 60.0
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.1e-24 116.3 81 65.4
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.1e-24 116.3 85 62.4
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 1.1e-24 116.3 85 61.2
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.9e-24 115.5 85 58.8
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.9e-24 115.5 84 57.1
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 7.4e-24 113.6 85 60.0
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 9.6e-24 113.2 85 58.8
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 9.6e-24 113.2 85 63.5
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.3e-23 112.8 85 60.0
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 2.1e-23 112.1 85 60.0
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 2.1e-23 112.1 85 60.0
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.8e-23 111.7 85 62.4
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 4.8e-23 110.9 84 58.3
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 4.8e-23 110.9 85 58.8
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.2e-23 110.5 85 58.8
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 6.2e-23 110.5 85 61.2
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 6.2e-23 110.5 85 61.2
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 8.2e-23 110.2 85 61.2
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.8e-22 109.0 72 66.7
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.8e-22 109.0 85 60.0
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 1.8e-22 109.0 85 56.5
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 3.1e-22 108.2 85 60.0
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.1e-22 108.2 83 60.2
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 4.0e-22 107.8 83 57.8
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 4.0e-22 107.8 81 64.2
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 4.0e-22 107.8 76 63.2
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 5.3e-22 107.5 84 53.6
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.9e-22 107.1 70 68.6
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 6.9e-22 107.1 103 51.5
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 6.9e-22 107.1 85 58.8
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 9.0e-22 106.7 85 55.3
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.5e-21 105.9 86 59.3
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.5e-21 105.9 83 57.8
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 1.5e-21 105.9 87 58.6
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.5e-21 105.9 85 57.6
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.5e-21 105.9 82 59.8
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 1.5e-21 105.9 85 56.5
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.0e-21 105.5 84 56.0
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.0e-21 105.5 85 52.9
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.6e-21 105.1 82 61.0
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 3.4e-21 104.8 85 60.0
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.5e-21 104.4 82 61.0
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 4.5e-21 104.4 85 54.1
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 5.8e-21 104.0 82 58.5
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 5.8e-21 104.0 85 52.9
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 7.6e-21 103.6 82 58.5
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.6e-21 103.6 85 55.3
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.0e-20 103.2 85 57.6
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.3e-20 102.8 83 57.8
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 3.8e-20 101.3 85 54.1
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.4e-19 99.4 85 51.8
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.4e-19 99.4 69 63.8
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 5.5e-19 97.4 85 49.4
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 5.5e-19 97.4 85 49.4
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 5.5e-19 97.4 85 49.4
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 7.1e-19 97.1 85 49.4
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 7.1e-19 97.1 72 61.1
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 9.3e-19 96.7 85 49.4
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 9.3e-19 96.7 77 55.8
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.2e-18 96.3 85 48.2
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 1.2e-18 96.3 85 48.2
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.6e-18 95.9 83 49.4
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.6e-18 95.9 85 49.4
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.6e-18 95.9 85 49.4
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.6e-18 95.9 85 49.4
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 2.1e-18 95.5 83 47.0
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 2.1e-18 95.5 85 47.1
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 3.5e-18 94.7 84 51.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.5e-18 94.7 84 48.8
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.5e-18 94.7 84 48.8
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 4.6e-18 94.4 85 48.2
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 4.6e-18 94.4 85 48.2
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 4.6e-18 94.4 85 49.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 4.6e-18 94.4 85 48.2
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 6.0e-18 94.0 84 47.6
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.0e-18 94.0 85 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 1.0e-17 93.2 80 48.8
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 2.3e-17 92.0 83 53.0
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 3.0e-17 91.7 42 95.2
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 3.9e-17 91.3 85 44.7
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 5.1e-17 90.9 72 56.9
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 5.1e-17 90.9 85 45.9
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 5.1e-17 90.9 85 45.9
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 5.1e-17 90.9 85 45.9
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 6.7e-17 90.5 69 53.6
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 8.7e-17 90.1 56 67.9
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.1e-16 89.7 85 47.1
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.9e-16 89.0 69 50.7
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 4.3e-16 87.8 72 59.7
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 7.4e-16 87.0 76 52.6
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 1.6e-15 85.9 64 64.1
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.6e-15 85.9 69 55.1
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 2.2e-15 85.5 69 53.6
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.8e-15 85.1 70 51.4
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 3.7e-15 84.7 86 50.0
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 4.8e-15 84.3 72 48.6
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 4.8e-15 84.3 70 55.7
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.4e-14 82.0 76 47.4
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 4.1e-14 81.3 72 47.2
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 5.3e-14 80.9 85 45.9
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 6.9e-14 80.5 69 49.3
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 9.0e-14 80.1 54 63.0
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.2e-13 79.7 85 45.9
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.2e-13 79.7 86 50.0
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 2.6e-13 78.6 74 51.4
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 5.9e-13 77.4 69 52.2
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 1.3e-12 76.3 70 55.7
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 3.8e-12 74.7 47 74.5
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.4e-11 72.8 67 55.2
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 7.2e-11 70.5 35 88.6
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 9.4e-11 70.1 60 50.0
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.4e-11 70.1 37 81.1
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.6e-10 68.2 62 46.8
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 4.6e-10 67.8 88 43.2
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 2.3e-09 65.5 89 42.7
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 3.0e-09 65.1 87 42.5
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 3.9e-09 64.7 56 50.0
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-08 62.8 89 41.6
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 3.3e-08 61.6 53 49.1
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.3e-07 59.7 45 57.8
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-07 59.3 58 46.6
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 9.1e-06 53.5 36 58.3
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 9.1e-06 53.5 51 51.0


User provided reference genes

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