Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 4104.7 2150 100.0
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 4057.7 2150 98.7
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 3544.2 2151 85.4
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 3411.3 2152 82.3
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 2970.3 1882 82.6
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 2458.3 1460 87.4
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 2404.4 2168 58.7
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2401.3 2170 58.8
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2326.2 2170 57.5
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 2298.5 2187 56.5
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 2263.8 2163 55.8
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 2242.2 2183 55.1
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 2235.7 2266 54.6
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 2206.8 2174 54.4
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 2199.9 2172 54.5
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 2179.8 2170 53.9
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 2137.5 2183 53.0
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 2131.3 2215 52.3
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 2123.2 2165 54.0
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 2114.3 2172 52.8
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 2108.6 2162 52.8
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 2090.5 2209 51.9
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 2086.6 2180 51.7
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 2084.3 2168 52.4
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 2083.5 2168 52.4
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 2083.5 2198 51.7
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 2074.3 2175 51.9
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 2068.9 2177 51.6
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 2067.0 2174 50.8
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 2063.5 2187 51.4
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 2041.9 2171 51.7
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 2023.1 2177 50.4
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 2020.7 2199 50.6
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 2013.0 2177 50.3
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 2013.0 2199 50.4
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 2008.4 2197 51.4
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 1998.8 2227 50.1
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1990.3 2289 49.2
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 1988.0 2298 49.0
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1986.1 2172 49.9
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1983.0 2174 50.0
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1981.1 2175 49.7
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1964.9 2177 49.4
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1956.0 2171 49.3
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1955.3 2205 49.5
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 1949.5 2182 49.6
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1948.7 2174 49.2
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1947.6 2179 49.1
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 1947.2 2173 48.9
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1944.1 2165 49.0
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1943.3 2172 48.3
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1942.2 2172 49.2
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 1933.3 2174 49.1
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1929.8 2188 49.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1929.1 2158 49.3
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1927.5 2178 49.4
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1926.8 2179 48.6
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1920.6 2172 47.9
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 1868.6 2176 48.5
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1854.3 2187 47.6
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1842.4 2205 47.5
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1842.0 2208 47.9
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1841.2 2185 47.5
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1834.3 2186 47.1
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1828.9 2238 46.2
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1825.1 2205 47.2
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1800.4 1947 49.9
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1788.5 2246 45.9
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1743.0 2243 44.8
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1742.6 2158 46.1
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1738.8 2245 44.6
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1732.2 2245 44.2
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1731.5 2251 44.5
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1719.9 2173 46.4
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1715.7 2240 44.1
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1712.2 2241 44.4
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1704.1 2236 44.2
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1697.6 2250 44.0
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1676.8 2241 44.0
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1600.5 1953 45.4
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 1567.7 2205 43.1
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1541.9 2330 40.5
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1524.6 2194 40.7
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1498.0 1814 47.1
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1495.7 1766 46.9
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1468.4 2189 40.1
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1454.5 1860 46.4
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 0.0e+00 1453.0 1528 52.1
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1434.1 1423 54.5
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1344.7 1699 45.6
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1315.1 1842 42.6
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1310.0 1842 42.5
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1307.7 1844 42.5
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 0.0e+00 1307.7 2187 39.1
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 0.0e+00 1304.7 1370 51.7
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1299.6 1848 41.9
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1295.8 1848 42.0
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 0.0e+00 1086.2 1071 55.9
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 2.9e-311 1072.8 626 88.7
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 3.6e-308 1062.8 1167 48.5
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 5.8e-282 975.7 986 53.8
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 3.4e-266 923.3 2223 30.8
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 2.4e-259 900.6 2231 31.5
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 9.9e-258 895.2 1212 43.1
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.2e-256 889.8 1433 39.9
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.1e-245 855.1 723 62.1
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 8.1e-236 822.4 2172 29.7
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.3e-235 819.7 822 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 3.3e-221 773.9 2109 28.1
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 3.1e-219 767.3 1137 38.6
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.8e-212 744.2 849 49.6
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.6e-210 737.6 849 50.6
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 3.2e-208 730.7 2324 26.6
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 4.8e-196 690.3 854 45.1
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.9e-186 656.8 801 49.3
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 8.5e-185 652.9 609 54.8
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.6e-175 622.1 633 54.0
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 7.1e-147 526.9 301 89.0
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 2.7e-146 525.0 500 54.4
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.0e-145 523.1 705 45.5
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 4.8e-135 487.6 563 48.1
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 7.1e-123 447.2 624 40.4
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-118 432.6 403 54.3
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 6.9e-118 430.6 396 56.8
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.0e-116 426.8 771 36.8
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.2e-116 425.6 613 43.1
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.8e-113 416.0 645 39.2
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 1.4e-110 406.4 360 57.8
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.2e-107 394.8 407 54.8
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 1.8e-102 379.4 876 32.3
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 3.4e-93 348.6 306 61.8
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 1.7e-87 329.7 390 46.7
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 9.1e-86 323.9 507 41.0
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 6.5e-84 317.8 266 64.7
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 2.0e-80 306.2 362 42.8
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.3e-78 298.1 391 45.0
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 1.8e-73 283.1 220 68.2
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 5.7e-72 278.1 618 32.8
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 6.3e-71 274.6 232 63.8
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 4.1e-70 271.9 200 68.0
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 1.0e-65 257.3 493 34.9
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 4.0e-65 255.4 306 42.2
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 1.3e-63 250.4 364 43.1
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 3.8e-60 238.8 275 51.6
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 6.6e-60 238.0 1083 24.7
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.2e-58 233.8 335 44.2
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 3.2e-54 219.2 116 99.1
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 3.5e-53 215.7 127 85.0
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 1.3e-52 213.8 220 48.6
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 1.3e-52 213.8 220 48.6
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 2.6e-48 199.5 419 34.8
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.7e-47 196.8 405 32.6
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 2.7e-45 189.5 144 66.7
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 1.7e-44 186.8 225 46.7
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.9e-35 156.8 94 86.2
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 1.2e-32 147.5 236 37.7
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 1.3e-31 144.1 149 49.0
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 2.4e-25 123.2 931 22.8
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.5e-24 120.6 209 38.3
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 4.4e-24 119.0 167 39.5
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 2.2e-23 116.7 167 39.5
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 3.8e-23 115.9 249 30.5
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 7.1e-22 111.7 131 48.9
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 1.3e-20 107.5 144 36.1
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 2.4e-17 96.7 203 31.0
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 4.5e-16 92.4 916 20.4
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 7.1e-14 85.1 403 25.6
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 3.5e-13 82.8 58 70.7
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 3.5e-13 82.8 183 29.0
SEGI_27748 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 5.1e-12 79.0 141 37.6
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 2.5e-11 76.6 251 31.1
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 1.3e-10 74.3 50 66.0
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 2.1e-10 73.6 86 45.3
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 9.0e-09 68.2 55 60.0
Solyc07g040661.1 Solanum lycopersicum HOM05D003586 ORTHO05D051155 7.6e-08 65.1 61 50.8
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 1.3e-07 64.3 55 56.4
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 1.3e-07 64.3 55 56.4
BolC5t34134H Brassica oleracea HOM05D003586 ORTHO05D004036 1.3e-07 64.3 81 44.4
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 3.8e-07 62.8 120 30.8
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 1.9e-06 60.5 75 40.0
THA.LOC104803129 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 4.2e-06 59.3 54 57.4


User provided reference genes

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